Gene detail

Detail information of MD02G1210100 Annotation

Gene ID	Annotation
MD02G1210100	Ubiquitin-like superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1210100	mRNA	Chr02	21759142	21763125	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
--	--	--	--

Gene Ontology

GO term	Description	Category
GO:0032258	CVT pathway	biological_process
GO:0006914	autophagy	biological_process

KEGG

KO	Description	Enzyme
K08341	GABA(A) receptor-associated protein	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02991.12	Atg8	4	106	1.10E-48

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	88.3031
SRR5252888	dormant buds	no	dormant buds(0 month)	41.4939
SRR5252889	dormant buds	no	dormant buds(0 month)	42.6902
SRR5252886	dormant buds	no	dormant buds(1 months)	28.9965
SRR5252887	dormant buds	no	dormant buds(1 months)	30.5564
SRR5252884	dormant buds	no	dormant buds(2 months)	31.0726
SRR5252882	dormant buds	no	dormant buds(3 months)	29.9092
SRR5252883	dormant buds	no	dormant buds(3 months)	52.3055
SRR5252880	dormant buds	no	dormant buds(4 months)	35.4856
SRR5252881	dormant buds	no	dormant buds(4 months)	37.0706
SRR5252878	bud break	no	bud break	43.4532
SRR5252879	bud break	no	bud break	19.1356
SRR3744766	flower	no	mature	34.2658
SRR3744767	flower	no	mature	34.2523
SRR3744768	flower	no	mature	37.9804
SRR6308190	stigmas	no	open flowers	61.9936
SRR6308181	styles	no	open flowers	63.0004
SRR6308188	filaments	no	open flowers	43.1804
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	59.7928
SRR6308192	pollen	no	open flowers	7.46537
SRR6308191	petals	no	open flowers	37.5101
SRR6308194	sepals	no	open flowers	35.665
SRR6308193	receptacles	no	open flowers	48.9273
SRR6308189	ovaries	no	open flowers	41.8729
SRR3384922	fruit	no	1 week after full bloom	32.8036
SRR3384921	fruit	no	2 week after full bloom	38.5817
SRR3384920	fruit	no	3 week after full bloom	55.2509
SRR3384919	fruit	no	4 week after full bloom	46.7326
SRR3384923	fruit	no	5 week after full bloom	66.8274
SRR3384918	fruit	no	6 week after full bloom	32.1303
SRR3384917	fruit	no	8 week after full bloom	41.7755
SRR3384916	fruit	no	10 week after full bloom	45.1963
SRR3384915	fruit	no	12 week after full bloom	56.6155
SRR3384914	fruit	no	14 week after full bloom	58.4451
SRR3384913	fruit	no	16 week after full bloom	61.6655
SRR3384912	fruit	no	18 week after full bloom	58.4127
SRR3384911	fruit	no	19 week after full bloom	72.478
SRR3384910	fruit	no	20 week after full bloom	48.8394
SRR768128	whole fruit	no	25 days post anthesis	35.5786
SRR768129	whole fruit	no	35 days post anthesis	41.7784
SRR768130	whole fruit	no	60 days post anthesis	34.8065
SRR768131	whole fruit	no	87 days post anthesis	37.4274
SRR7343308	immature fruit flesh	no	immature	26.0702
SRR7343309	immature fruit flesh	no	immature	28.9359
SRR6320494	ripe fruit flesh	no	mature	50.5218
SRR5405143	ripe fruit peel	no	mature	48.7569
SRR6320572	ripe fruit peel	no	mature	18.8517
SRR7403504	fruit	uninfected	mature	45.8197
SRR7403506	fruit	uninfected	mature	42.0437
SRR7403507	fruit	uninfected	mature	44.887
SRR7403500	fruit	infected with penicillium expansum	mature	24.8058
SRR7403501	fruit	infected with penicillium expansum	mature	34.1076
SRR7403508	fruit	infected with penicillium expansum	mature	29.3856
SRR7403502	fruit	infected with penicillium expansum	mature	17.2713
SRR7403503	fruit	infected with penicillium expansum	mature	22.7863
SRR7403505	fruit	infected with penicillium expansum	mature	17.9219
SRR1613973	Central seeds	no	20DAPF	42.7447
SRR1613974	Central seeds	no	20DAPF	42.1147
SRR1613975	Central seeds	no	20DAPF	40.4927
SRR1613976	Lateral seeds	no	20DAPF	49.6587
SRR1613977	Lateral seeds	no	20DAPF	50.5644
SRR1613978	Lateral seeds	no	20DAPF	48.4349
SRR3744786	stem	no	mature	36.9126
SRR3744787	stem	no	mature	39.3716
SRR3744772	stem	no	mature	35.5076
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.73745
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	14.6941
SRR1089478	leaf	Virus-free	plantlets	6.73288
SRR1089477	leaf	ASGV-infected	plantlets	13.3467
SRR767660	leaf	uninfected	fully developed	17.6262
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	15.3503
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	18.2248
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	61.2277
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	34.613
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	12.5278
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	35.5343
SRR6308182	young leaf	no	immature leaves	11.2327
SRR3744769	leaf	no	mature	27.2807
SRR3744770	leaf	no	mature	26.4382
SRR3744771	leaf	no	mature	28.6484
SRR5405145	leaf	no	mature	5.68199
SRR6320561	leaf	no	mature	29.2548