Gene detail

Detail information of MD02G1219300 Annotation

Gene ID	Annotation
MD02G1219300	expansin A25

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1219300	mRNA	Chr02	25478594	25479655	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G39300.1	1	ATEXP25;ATEXPA25;ATHEXP ALPHA 1.18;EXP25;EXPA25\|expansin A25;EXPANSIN 25
Arabidopsis thaliana	AT5G39280.1	0.918	ATEXP23;ATEXPA23;ATHEXP ALPHA 1.17;EXPA23\|EXPANSIN 23;expansin A23;
Prunus persica	Prupe.2G121800.1.p	1	expansin A23
Pyrus communis	PCP044673.1	1	-
Pyrus x bretschneideri	Pbr029076.1	1	-
Rosa multiflora	Rmu_sc0006218.1_g000027.1	1	-
Rubus occidentalis	Ro02_G36059	1	-
Fragaria vesca	mrna04299.1	1	expansin A23
Vitis vinifera	GSVIVT01032935001	1	expansin A25
Populus trichocarpa	Potri.017G092700.1	1	expansin A23

Gene Ontology

GO term	Description	Category
GO:0009664	plant-type cell wall organization	biological_process
GO:0005576	extracellular region	cellular component

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03330.14	DPBB_1	71	156	3.90E-20
PF01357.17	Pollen_allerg_1	167	244	1.50E-27

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0554033
SRR5252888	dormant buds	no	dormant buds(0 month)	0.334454
SRR5252889	dormant buds	no	dormant buds(0 month)	0.129149
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0.241078
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.132868
SRR3744766	flower	no	mature	0
SRR3744767	flower	no	mature	0.136358
SRR3744768	flower	no	mature	0.509094
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.498381
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.159819
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	1.12873
SRR3384921	fruit	no	2 week after full bloom	1.95485
SRR3384920	fruit	no	3 week after full bloom	0.21516
SRR3384919	fruit	no	4 week after full bloom	0.397551
SRR3384923	fruit	no	5 week after full bloom	0.189034
SRR3384918	fruit	no	6 week after full bloom	0.105217
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	1.62221
SRR768129	whole fruit	no	35 days post anthesis	5.78962
SRR768130	whole fruit	no	60 days post anthesis	12.9425
SRR768131	whole fruit	no	87 days post anthesis	0.187344
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	47.6658
SRR1613974	Central seeds	no	20DAPF	38.9666
SRR1613975	Central seeds	no	20DAPF	39.6619
SRR1613976	Lateral seeds	no	20DAPF	43.4069
SRR1613977	Lateral seeds	no	20DAPF	58.1259
SRR1613978	Lateral seeds	no	20DAPF	54.0552
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.108968
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.364404
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.312002
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.563734
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0.134129
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0