Gene detail

Detail information of MD02G1223400 Annotation

Gene ID	Annotation
MD02G1223400	GroES-like family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0708	N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] chaperonin GroES N-acetyl-gamma-glutamyl-phosphate reductase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1223400	mRNA	Chr02	26075101	26078107	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G60210.1	1	GroES-like family protein
Rosa multiflora	Rmu_sc0000019.1_g000007.1	1	-
Vitis vinifera	GSVIVT01018352001	1	GroES-like family protein
Populus trichocarpa	Potri.014G044300.1	1	GroES-like family protein
Nicotiana benthamiana	Niben101Scf07639g05011.1	1	10 kDa chaperonin
Nicotiana benthamiana	Niben101Scf10476g01010.1	0.609	10 kDa chaperonin
Oryza sativa	LOC_Os10g41710.1	1	"chaperonin, putative, expressed"
Zea mays	GRMZM2G103236_P01	1	CHL-CPN10;
Zea mays	GRMZM2G050961_P01	0.673	-

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	cellular component
GO:0006457	protein folding	biological_process

KEGG

KO	Description	Enzyme
K04078	chaperonin GroES	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00166.17	Cpn10	49	135	1.30E-14

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	121.048
SRR5252888	dormant buds	no	dormant buds(0 month)	11.1574
SRR5252889	dormant buds	no	dormant buds(0 month)	13.5881
SRR5252886	dormant buds	no	dormant buds(1 months)	18.1708
SRR5252887	dormant buds	no	dormant buds(1 months)	17.5739
SRR5252884	dormant buds	no	dormant buds(2 months)	11.1029
SRR5252882	dormant buds	no	dormant buds(3 months)	18.8686
SRR5252883	dormant buds	no	dormant buds(3 months)	15.1676
SRR5252880	dormant buds	no	dormant buds(4 months)	25.3138
SRR5252881	dormant buds	no	dormant buds(4 months)	20.3877
SRR5252878	bud break	no	bud break	28.9031
SRR5252879	bud break	no	bud break	61.3731
SRR3744766	flower	no	mature	12.9631
SRR3744767	flower	no	mature	12.8581
SRR3744768	flower	no	mature	12.5188
SRR6308190	stigmas	no	open flowers	16.9129
SRR6308181	styles	no	open flowers	16.9171
SRR6308188	filaments	no	open flowers	27.1772
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.94975
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	31.2144
SRR6308194	sepals	no	open flowers	38.1554
SRR6308193	receptacles	no	open flowers	50.6915
SRR6308189	ovaries	no	open flowers	33.7141
SRR3384922	fruit	no	1 week after full bloom	91.6855
SRR3384921	fruit	no	2 week after full bloom	86.2308
SRR3384920	fruit	no	3 week after full bloom	78.9648
SRR3384919	fruit	no	4 week after full bloom	71.6765
SRR3384923	fruit	no	5 week after full bloom	81.5054
SRR3384918	fruit	no	6 week after full bloom	64.6738
SRR3384917	fruit	no	8 week after full bloom	61.2086
SRR3384916	fruit	no	10 week after full bloom	56.091
SRR3384915	fruit	no	12 week after full bloom	72.6583
SRR3384914	fruit	no	14 week after full bloom	61.4599
SRR3384913	fruit	no	16 week after full bloom	49.971
SRR3384912	fruit	no	18 week after full bloom	41.9166
SRR3384911	fruit	no	19 week after full bloom	42.2054
SRR3384910	fruit	no	20 week after full bloom	26.4124
SRR768128	whole fruit	no	25 days post anthesis	44.9848
SRR768129	whole fruit	no	35 days post anthesis	49.4
SRR768130	whole fruit	no	60 days post anthesis	34.7223
SRR768131	whole fruit	no	87 days post anthesis	17.9833
SRR7343308	immature fruit flesh	no	immature	20.5977
SRR7343309	immature fruit flesh	no	immature	23.1731
SRR6320494	ripe fruit flesh	no	mature	18.5353
SRR5405143	ripe fruit peel	no	mature	27.1094
SRR6320572	ripe fruit peel	no	mature	15.7416
SRR7403504	fruit	uninfected	mature	32.1542
SRR7403506	fruit	uninfected	mature	28.3052
SRR7403507	fruit	uninfected	mature	27.2874
SRR7403500	fruit	infected with penicillium expansum	mature	14.6776
SRR7403501	fruit	infected with penicillium expansum	mature	15.0321
SRR7403508	fruit	infected with penicillium expansum	mature	11.5
SRR7403502	fruit	infected with penicillium expansum	mature	8.37822
SRR7403503	fruit	infected with penicillium expansum	mature	7.63902
SRR7403505	fruit	infected with penicillium expansum	mature	10.9865
SRR1613973	Central seeds	no	20DAPF	61.5787
SRR1613974	Central seeds	no	20DAPF	56.4374
SRR1613975	Central seeds	no	20DAPF	57.1584
SRR1613976	Lateral seeds	no	20DAPF	58.2182
SRR1613977	Lateral seeds	no	20DAPF	60.8989
SRR1613978	Lateral seeds	no	20DAPF	60.3195
SRR3744786	stem	no	mature	11.1305
SRR3744787	stem	no	mature	10.144
SRR3744772	stem	no	mature	9.77473
SRX765691	seedling shoot apex	no	4-6 week old seedling	28.1997
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	45.0821
SRR1089478	leaf	Virus-free	plantlets	18.9629
SRR1089477	leaf	ASGV-infected	plantlets	21.1046
SRR767660	leaf	uninfected	fully developed	54.2566
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	15.4308
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	43.7802
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	82.7202
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	3.44447
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	25.4695
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	24.0739
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	25.5587
SRR6308182	young leaf	no	immature leaves	75.6998
SRR3744769	leaf	no	mature	17.6173
SRR3744770	leaf	no	mature	13.1153
SRR3744771	leaf	no	mature	13.6559
SRR5405145	leaf	no	mature	25.6396
SRR6320561	leaf	no	mature	43.4708