Gene detail

Detail information of MD02G1243100 Annotation

Gene ID	Annotation
MD02G1243100	lactate/malate dehydrogenase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1243100	mRNA	Chr02	29349492	29355130	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G58330.2	1	lactate/malate dehydrogenase family protein
Arabidopsis thaliana	AT5G58330.1	1	lactate/malate dehydrogenase family protein
Prunus persica	Prupe.2G091600.1.p	1	lactate/malate dehydrogenase family protein
Pyrus communis	PCP000993.1	1	-
Pyrus x bretschneideri	Pbr041160.1	1	-
Rosa multiflora	Rmu_sc0000574.1_g000065.1	1	-
Vitis vinifera	GSVIVT01016172001	1	lactate/malate dehydrogenase family protein
Solanum lycopersicum	Solyc11g007990.1.1	1	lactate/malate dehydrogenase family protein
Solanum lycopersicum	Solyc01g090710.2.1	1	Lactate/malate dehydrogenase family protein
Solanum lycopersicum	Solyc09g090140.2.1	1	Lactate/malate dehydrogenase family protein
Populus trichocarpa	Potri.008G031700.1	1	lactate/malate dehydrogenase family protein
Nicotiana benthamiana	Niben101Scf02819g07011.1	1	Malate dehydrogenase
Oryza sativa	LOC_Os08g44810.1	1	"lactate/malate dehydrogenase, putative, expressed"
Zea mays	GRMZM2G129513_P01	1	Malate dehydrogenase

Gene Ontology

GO term	Description	Category
GO:0046554	malate dehydrogenase (NADP+) activity	molecular_function
GO:0005975	carbohydrate metabolic process	biological_process
GO:0055114	oxidation-reduction process	biological_process
GO:0006108	malate metabolic process	biological_process

KEGG

KO	Description	Enzyme
K00051	malate dehydrogenase (NADP+)	EC:1.1.1.82

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02866.14	Ldh_1_C	249	418	7.20E-38

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	77.7773
SRR5252888	dormant buds	no	dormant buds(0 month)	31.5212
SRR5252889	dormant buds	no	dormant buds(0 month)	25.3902
SRR5252886	dormant buds	no	dormant buds(1 months)	30.6803
SRR5252887	dormant buds	no	dormant buds(1 months)	18.6785
SRR5252884	dormant buds	no	dormant buds(2 months)	36.2876
SRR5252882	dormant buds	no	dormant buds(3 months)	33.2074
SRR5252883	dormant buds	no	dormant buds(3 months)	32.7122
SRR5252880	dormant buds	no	dormant buds(4 months)	38.9896
SRR5252881	dormant buds	no	dormant buds(4 months)	33.8243
SRR5252878	bud break	no	bud break	32.4986
SRR5252879	bud break	no	bud break	38.5873
SRR3744766	flower	no	mature	32.8957
SRR3744767	flower	no	mature	35.1253
SRR3744768	flower	no	mature	35.6338
SRR6308190	stigmas	no	open flowers	66.9532
SRR6308181	styles	no	open flowers	66.2423
SRR6308188	filaments	no	open flowers	31.6713
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	11.2216
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	33.7532
SRR6308194	sepals	no	open flowers	96.3855
SRR6308193	receptacles	no	open flowers	57.966
SRR6308189	ovaries	no	open flowers	55.6156
SRR3384922	fruit	no	1 week after full bloom	38.2581
SRR3384921	fruit	no	2 week after full bloom	31.1501
SRR3384920	fruit	no	3 week after full bloom	40.5461
SRR3384919	fruit	no	4 week after full bloom	30.255
SRR3384923	fruit	no	5 week after full bloom	32.7617
SRR3384918	fruit	no	6 week after full bloom	23.6857
SRR3384917	fruit	no	8 week after full bloom	27.7842
SRR3384916	fruit	no	10 week after full bloom	30.2046
SRR3384915	fruit	no	12 week after full bloom	22.896
SRR3384914	fruit	no	14 week after full bloom	36.0121
SRR3384913	fruit	no	16 week after full bloom	33.0915
SRR3384912	fruit	no	18 week after full bloom	25.8255
SRR3384911	fruit	no	19 week after full bloom	28.8639
SRR3384910	fruit	no	20 week after full bloom	15.1866
SRR768128	whole fruit	no	25 days post anthesis	32.4486
SRR768129	whole fruit	no	35 days post anthesis	30.0339
SRR768130	whole fruit	no	60 days post anthesis	23.7904
SRR768131	whole fruit	no	87 days post anthesis	19.1921
SRR7343308	immature fruit flesh	no	immature	19.8982
SRR7343309	immature fruit flesh	no	immature	20.1375
SRR6320494	ripe fruit flesh	no	mature	12.2479
SRR5405143	ripe fruit peel	no	mature	6.50251
SRR6320572	ripe fruit peel	no	mature	2.599
SRR7403504	fruit	uninfected	mature	13.7646
SRR7403506	fruit	uninfected	mature	14.992
SRR7403507	fruit	uninfected	mature	15.1187
SRR7403500	fruit	infected with penicillium expansum	mature	1.31248
SRR7403501	fruit	infected with penicillium expansum	mature	0.922593
SRR7403508	fruit	infected with penicillium expansum	mature	1.33018
SRR7403502	fruit	infected with penicillium expansum	mature	2.45679
SRR7403503	fruit	infected with penicillium expansum	mature	1.46774
SRR7403505	fruit	infected with penicillium expansum	mature	1.83558
SRR1613973	Central seeds	no	20DAPF	2.60109
SRR1613974	Central seeds	no	20DAPF	2.78418
SRR1613975	Central seeds	no	20DAPF	2.43955
SRR1613976	Lateral seeds	no	20DAPF	2.2841
SRR1613977	Lateral seeds	no	20DAPF	2.15141
SRR1613978	Lateral seeds	no	20DAPF	2.0413
SRR3744786	stem	no	mature	24.4776
SRR3744787	stem	no	mature	22.0944
SRR3744772	stem	no	mature	23.9329
SRX765691	seedling shoot apex	no	4-6 week old seedling	29.165
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	22.6005
SRR1089478	leaf	Virus-free	plantlets	72.9397
SRR1089477	leaf	ASGV-infected	plantlets	79.1956
SRR767660	leaf	uninfected	fully developed	85.3543
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	144.461
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	71.426
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	26.6852
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	52.9425
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	63.6808
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	60.8355
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	63.5719
SRR6308182	young leaf	no	immature leaves	30.6405
SRR3744769	leaf	no	mature	62.6277
SRR3744770	leaf	no	mature	64.4262
SRR3744771	leaf	no	mature	65.4204
SRR5405145	leaf	no	mature	146.279
SRR6320561	leaf	no	mature	91.3849