Gene detail

Detail information of MD02G1260900 Annotation

Gene ID	Annotation
MD02G1260900	S-locus lectin protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0372

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1260900	mRNA	Chr02	31452409	31455903	+

Sequences

CDS:

MD02G1260900

ATGAATTCTACTAAATTCTTTTTTGTCATAATTAGATTGCTTATCTTCCTTGTGATTCCTCCCTCTTCCATTTCTGTTGCCCTGGATGCCATTACACCAAACCAACCCCTAAGATATGGCGACGTTCTTCTCTCCGCCACTAAAATCTTTGCACTAGGGTTTTTTAGCCCAGGCAATTCTCATAACCGTTACATCGGAGTTTGGTACAACAATATTCCAATCCAAACAATCGTCTGGATTGCAAACAGAGACAACCCCATAACTCCTATTGCTGGAACTTGGCTCCTAGCTATTCATGGAGATCATGGAGGCCTTGTCATTTATGGGAAGGACCAAAATAACCCTCTTTGGTCTGCTAATGTCACAGTCTCTTCGCCAAACAATTCCGTAATAGCCAAACTTTTGGATACAGGAAATCTTGTATTGCTTGAGAACAATGGTAGTAGCCCAAGGGTGCTGTGGCAAGGCTTTGATTACCCCTCAGATACACTGCTTCCATTAATGAAGATTGGGCTGAACCGGCGGTCAGGGCTGAACAGGCGCTTAACATCTCGGAAGTCCCAGGATGATCCCGGATCAGGGAATTTTTCGTATGAGATTGACCCAACCGGGTTTCCGCAGTTGATTCTTTACAAGGGTCAAACCAAATGGTTTCGAGGCGGAACTTGGACCGGCCAGAGATTTAGCGGGATCCCTGAATTTACAATTAATAGTGTCCGCAGCTTTGTGAACGATAAAGATGAGATATATATGATGTATACTGTTCCAAATGGCTCAGTATTCACAAGGGGGGTGCTAGATGAATCAGGAATTGTTAAACGGTTCGTATGGCGAGATCAAGAAAACAAATGGATCGAAGTAAGCTCTAGCCCTAGTGAGTGGTGTGACTACTATGGACAGTGTGGTCCAAATGGTAACTGCGACCCATACAGTAATTATAACTTCTCTTGCCTTTGTCTGCCCGGATTTGAACCCAAGTTCCCCCAGGACTGGTATCTGAGAGATGGATTGGGTGGATGCCTGAGAAAATTGGGAGCGTCTACATGCCAAAAAGGGGAAGGGTTTGCTAAGGTGGCACGTGTGAAGGTACCCGACTCATCTAAGGCACGTGTGAATATGAGTTTGAGTCTGCAAGGGTGTGAGCAAGAGTGCATGAAGAATTGTTCTTGCATGGCATACGCGCGTGCAGATGAAAGGGGAGGAGGGAAGGGTTGCGTGACGTGGTACGGGGACTTGATAGACACAAGAACTTTTTCAAATGTTGGGCAGGACTTGTATGTACGAGTTGATGCAGTTACTTTAGCTCAATTTGCAAATGGTTCTGTAATTAGCAAGAAGGCAAGGCTGGCAATTTCACTATTATCCGCTCTTGTGTTCCTGGGCCTAGTTTTCCTTTTGTGTTGCTTGGTAAGGAGGAAGAGCAAAGGCAGGCAGAGAAAAAATATGTTTTTCATGGAAGATAGAACAGATCTCGATCTCGATGATCAAAGTAAAATAAACTCAGAATTACAATTCTTTGATCAAACAACCGTCGCAGCCGCCACGGACAATTTCTCTGTAGCGAACAAGCTTGGGAAAGGAGGTTTTGGCTCAGTCTATAAGGGTGTACTTCATAATGGAAAGGAAATAGCGGTGAAACGACTATCGAAGAATTCTGGTCAAGGAATTGAAGAGTTTAAGAATGAAGTTGTGATAATTGCGAAACTCCAACACATAAACCTTGTCAAGATTATAGGTTGCTGCGTTGAAGATGACGAGAAGATGCTGATCTATGAATACGTACCAAACAAAAGTTTGGACTGTTTTATTTTTGATGAAACAAAAAGATATCTTTTAGATTGGACAAAACGCTTTGAGATTATCTGTGGGATTGCTAGAGGGATTTTATACCTTCATCAAGATTCGAGATTAAGGATTATCCATAGAGATCTAAAGGCCAGTAATATTCTACTGGATGCATCTATGAGCCCCAAAATAGCAGATTTTGGTATGGCAAGAATATTTCCAAGGGATCAATGTGAAGCAAATACACATCGTGTGGTCGGAACATATGGTTATATGTCACCGGAGTATGCAATGGAAGGAATTTTTTCAGTAAAATCTGATGTGTACAGTTTTGGTGTTTTGCTGCTAGAAATCATAACTGGCAGAAGGAATTCCGGTTACTACCACAAAAAATATCCCCACTCAAATTTGGTTGGATATGTTTGGGACTTGTGGAGAGAAGGCAATGCCTTGGAAATCGTTGATCCATCCATAGGCGAATCGTACCATGTCAACGAAGTTGTGAGATGCATCCAAATTGGCCTATTGTGTGTGCAAGAGTTTGCTGCTGACCGGCCAACCATGTCGGCGGTTGTTTTCATGCTAGGTAAAGAGGCAGCAGTTCCTTCCCCAACACAGCCTGCATTTTTGTTGAAGAGGAGTTGTACTAGAGTAGATCCATCAACGAGTACTGAAGGAGCTAGTTCTATAAATGATGTGACATGTACAGAAATAGAAGCTCGCTAA

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.7.2

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP029346.1	1	-
Pyrus x bretschneideri	Pbr024690.1	1	-
Oryza sativa	LOC_Os04g53994.1	1	"kinase, putative, expressed"
Oryza sativa	LOC_Os09g37834.1	1	"serine/threonine-protein kinase receptor precursor, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0005515	protein binding	molecular_function
GO:0048544	recognition of pollen	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01453.20	B_lectin	75	187	7.20E-28
PF00954.16	S_locus_glycop	218	327	4.80E-25
PF08276.7	PAN_2	349	415	5.20E-20
PF07714.13	Pkinase_Tyr	520	727	2.70E-47

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.260479
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.173467
SRR5252884	dormant buds	no	dormant buds(2 months)	0.138514
SRR5252882	dormant buds	no	dormant buds(3 months)	0.0694609
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.0693225
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.138095
SRR5252879	bud break	no	bud break	0.038283
SRR3744766	flower	no	mature	0.30279
SRR3744767	flower	no	mature	0.314918
SRR3744768	flower	no	mature	0.403533
SRR6308190	stigmas	no	open flowers	0.0555244
SRR6308181	styles	no	open flowers	0.0478045
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.40711
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.490587
SRR6308194	sepals	no	open flowers	2.02044
SRR6308193	receptacles	no	open flowers	0.0473964
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.227581
SRR3384921	fruit	no	2 week after full bloom	0.0703836
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.0286274
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0.131264
SRR3384916	fruit	no	10 week after full bloom	0.113682
SRR3384915	fruit	no	12 week after full bloom	0.10088
SRR3384914	fruit	no	14 week after full bloom	0.228292
SRR3384913	fruit	no	16 week after full bloom	0.153651
SRR3384912	fruit	no	18 week after full bloom	0.0720969
SRR3384911	fruit	no	19 week after full bloom	0.207448
SRR3384910	fruit	no	20 week after full bloom	0.027071
SRR768128	whole fruit	no	25 days post anthesis	0.0783937
SRR768129	whole fruit	no	35 days post anthesis	0.0860879
SRR768130	whole fruit	no	60 days post anthesis	0.144335
SRR768131	whole fruit	no	87 days post anthesis	0.0543209
SRR7343308	immature fruit flesh	no	immature	0.191947
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0361468
SRR7403506	fruit	uninfected	mature	0.0190919
SRR7403507	fruit	uninfected	mature	0.0226684
SRR7403500	fruit	infected with penicillium expansum	mature	3.08297
SRR7403501	fruit	infected with penicillium expansum	mature	3.81255
SRR7403508	fruit	infected with penicillium expansum	mature	4.54741
SRR7403502	fruit	infected with penicillium expansum	mature	3.51581
SRR7403503	fruit	infected with penicillium expansum	mature	2.80491
SRR7403505	fruit	infected with penicillium expansum	mature	2.98675
SRR1613973	Central seeds	no	20DAPF	0.0194599
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0.00907553
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0.0110772
SRR1613978	Lateral seeds	no	20DAPF	0.0169583
SRR3744786	stem	no	mature	0.0296668
SRR3744787	stem	no	mature	0.0293376
SRR3744772	stem	no	mature	0.0146306
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0259278
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.145137
SRR1089478	leaf	Virus-free	plantlets	0.752082
SRR1089477	leaf	ASGV-infected	plantlets	0.680613
SRR767660	leaf	uninfected	fully developed	0.953983
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.01542
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.821467
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0.798445
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.7263
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.53578
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.54051
SRR6308182	young leaf	no	immature leaves	0.23889
SRR3744769	leaf	no	mature	0.516148
SRR3744770	leaf	no	mature	0.557589
SRR3744771	leaf	no	mature	0.391788
SRR5405145	leaf	no	mature	4.56692
SRR6320561	leaf	no	mature	8.47939