Gene detail

Detail information of MD02G1262100 Annotation

Gene ID	Annotation
MD02G1262100	protein kinase family protein / WD-40 repeat family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1262100	mRNA	Chr02	31635906	31643956	-

Sequences

CDS:

MD02G1262100

TTTGACACCGTGACCCGCCCGAACCCCTCATCTTCTTCTTCTTCTTCCCACTCCCTCCAACCTGCAGAAATCCTAAGCTCTGAATTCCCCATTTTCTCCCATTCAATTTGTTTAGGTGGTTGCCTGCTTCCAAAGTTTAATGTTAAACCCTACTTTGAAAATTGAAATTAATTGCGAGATTGAGAGGCAAAGGCAGAGGGAAAATCGATGGGGAACAAGATCGCTCGAACGACGCAAGTGTCGGCGTCGGAGTACTACCTCCACGACCTGCCGTCGTCCTACAACCTGGTCCTGAAGGAGGTTCTAGGGCGGAGCCGCTTCTTCAAGTCGATTGAGTGCAAGCACGACGAGGGTTTGGTCCTCGTCAAGGTCTATTTCAAGCGCGGTGACTCCATTGATCTCCGCGAGTACGAGCGCCGCCTCTCCATCATCAAGGAAACCTTCCGTACTCTCGATCACCCTCACGTTTGGCCCTTCCAGTTTTGGCAAGAGACAGATAAAGCTGCGTATCTTGTGAGGCAATTCTTCTTCAACAATCTGCACGACCGGTTAAGCACCCGCCCGTTTCTCAGTCTAATCGAGAAGAAATGGTTGGCCTTTCAGTTACTTCTTGCTCTGAAGCAGTGCCATGATAAAGGAATATGTCACGGTGATATTAAGTGTGAGAATGTGTTGGTGACTTCTTGGAATTGGCTCTACCTTGCTGACTTTGCATCCTTCAAACCCACCTACATACCATATGACGATCCTTCTGATTTCTCTTTTTTCTTTGACACGGGAGGAAGAAGGCTTTGTTATCTTGCTCCTGAGAGATTTTATGAGCATGGAGGTGAGATGCAGGTTGCACAAGATGCACCATTAAGGCCATCTATGGACATATTTGCTGTAGGGTGTGTAATTGCTGAGCTTTTCCTTGAGGGACAGCCACTGTTCGAACTCTCTCAACTTCTTGCTTATCGTAGAGGGCAATACGATCCTAGCCAACTTCTTGAAAAGATACCAGATTCTGGGATTCGCAAGATGATACTTCATATGATTCAGTTGGAACCAGAGTTGCGACATTCTGCTGATAGCTACCTTCAGGAGTATACAACCATTGTTTTTCCAAGTTACTTCTCTCCATTTCTGCATAATTTCCATTGTTTCTGGAATCCCCTTCATTCAGATATGAGGGTTGCACTTTGCCAGAGTGTTTTTCATGAGATACTTAAACAAATGATGAGCAGTAGGTCAACTGAGGACACTGGAACAGGACCGGGAACTCCTTCAAGTGCCCATGGCATGAGTGGTAGAACTTCTCAGGAAGCAGTTGTAATGCAGAACAAGGGTTTGACAAGGGGCTCATTTACAAAGAGTGAAGAGATGGGTAAAGGCTTAAAATGTGATCAATTGGAACTTCTCGGTGATATCAATACCCTTCTTCGGGATGTTAAACAAAGTAATAATTATTCTGCTACCAAGCCAATGGTTAACGATAATCCCGATTCTGCATTTTCCCCGAATCTTGGCAACTATGGCATGCAATCTCCTGGTGAATTACTTCAATCTATCTCTAATGCATTTAGGAGAAACGATCATCCTTTCCTGAAAAAGATTACATTGAATGATTTGAATTCTTTGATGTCGAAGTATGACAGCCATTCAGATACCTTTGGCACACCATTTCTGCCATTACCTGAAAACAGTATCAGATGTGAGGGCATGGTTCTGATTACCTCGTTGCTCTGTTCATGCATACGTAATGTAAAATTGCCTCATTTAAGGAGGAGGGCCATACTTTTGCTGAAATCCTCTGCCTTGTATATTGATGATGAAGATCGTTTGCAACGTGTAATTCCATATGTTGTTGCAATGCTTTCAGATGCAGCTGCAATTGTGCGTTGTGCTGCCTTGGAGACGTTGTGTGACATACTACCTCTAGTCCGAGATTTTCCTCCCAGTGATGCAAAAATTTTTCCGGAGTATATTCTGCCAATGCTTTCCATGCTTCCGGATGATCCAGAAGAAAGTGTGAGGATATGTTATGCCAGTAATATTGCTAAGCTGGCGCTAACTGCTTATGGTTTCTTGGTTCACTCAATGCGCTTGAGTGAGGCTGGGGTACTTGATGAATTAAGTTCTGCAAAAAAGCCGCTGGCATCATCTAGTGAGACATCTGGTCAACTTGCTGTGTTGAGGAAGTCTATAGCTGAGGTCATTCAAGAACTTGTTATGGGTCCAAAGCAAACTCCAAATATCAGGAGAGCACTCCTTCAGGACATTAGCAACCTATGCTGCTTCTTTGGCCAGAGACAGAGTAATGACTTTTTGTTACCCATTCTCCCTGCTTTTCTGAATGATCGAGATGAGCAGCTGAGAGCAGTATTCTATGGGCAAATTGTATATGTGTGCTTCTTTGTGGGTCAAAGAAGTGTGGAAGAATATCTATTACCTTACATTGAGCAGGCTGTAAGTGATGTAACAGAGGCTGTAATTGTCAATGCATTGGACTGTTTGGCCATTTTGTGCAAAAGTAGTTTCTTGCGGAAGAGGATACTTCTTGAAATGATTGAGCATGCATTTCCATTGTTATGCTATCCTAGTCAATGGGTAAGAAGGTCAGCTGTCACTTTCATTGCAGCCAGTAGTGACAGCTTAGGTGCTGTAGATTCCTATGTCTTTCTAGCCCCTGTTATTCGCCCCCTACTCCGCAGACAGCCAGCATCTCTTGCTTCTGAAAAGGCTCTCCTTTTGTGTTTAAAGCCTCCAGTCTCAAGACAGGTTTTTTACCAAGTTCTAGAAAATGCAAGGAGTTCAGACATGTTGGAAAGACAGAGAAAGATATGGTACAACTCTTGGCCTCAGTCTAAACAATGGGAAAGTGTTGACTTGCTTCATAAAGGAGTTGAGGAACTGAGTTCAACAGGGAGCTGGCCAGACAAGCAACAAAGTGCCGAAAATCATAAACTTACTGGAAAGGCCTTGCAACAAGGAGAGTTAACTGAATGTGATGATGGTGAGGCTAAGTTGAGAAGTATGGGAAGCTTTACACGGTCTTCTAGCACAGTTGACATTCATGATCCTTTGTCCTCTGAAAAGTTGCAATTTTCAGGGTTTATGTGGCCACAGGGAAGTTATGTGAATAGCTTCATGTGCGATAAATCATCTGTTGGCATACCTTTATACTCCTTTAGCATGGACAAGCGAGCAGTCGGAGGTCCTCCTGCAACATCTGATTCTTCTTCACAAGTGAATTCTGTAGGAATTGGTGCATCAGCTATGCCTTGGATGGATCCAGTAAATAAATCATTTAGTTTGGCTAGTTCTGTTCCAGCACCTAAGTTTGTGTCAGGATCATTCAACATTGGCAATGGTTCCAAACAGTTCTATAGAGTAGTACATGAGCCAGATGGTAGGGATAATGATCAAACAGCCTTTGGTAATAGCAAGCTTCAAGATATGGGATTATCTGGCACTACAAAATGTGCTATTCCTGCGGAAGATGCATCCACAGCTAGTGATCTAACAGGAATGCCGTCTCCTTCACGAAGTTCATCAATTCCAGACTCTGGTTGGAGGCCTCGTGGGGTGTTGGTTGCTCACCTGCAAGAACATCGGTCTGCTGTCAATGACATAGCCATTTCAACTGATCATAGCTTTTTTGTGAGTGCATCTGATGATTCCACTGTTAAGGTGTGGGATTCAAGAAAGTTGGAAAAGGACATATCATTTCGGTCAAGGTTGACTTATCATCTAGAAGGAAGCCGTGCACTGTGCAGTGCAATGCTCCGGGGGTCTGCCCAAGTCGTGGTAGGAGCATGTGATGGCATGATACATATGTTTTCTGTTGATTACATCTCCAGGGGACTTGGTAATGTTGTTGAAAAGTATTCAGGTGTTGCTGATATCAAGAAGAAGGATATCAAGGAAGGTGCCATATTGAGCCTGTTGAATTTCTCAGCGGATAACGGCACAAATCAGATGGTTATGTACAGCACCCAAAATTGTGGGATCCATCTTTGGGATGTAAGGCTGAATACCATTTCTTGGACATTGAGAGCAACTCCTGAGGAGGGCTATGTGTCTTCGCTGGTAACAGGCCCCTGTGAAAATTGGTTTGTGTCAGGATCTTCGAGGGGTGTGCTTACTCTTTGGGATATGAGGTTCCTTATTCCTGTAAACTCATGGCAGTATTCTTCTGTTTGCCCTATAGAGAAAATGTGCCTGTTTCTTCCTCCACCAAATGCCTCTGTGTCTGCTGCTGCAAGGCCCCTTATTTATGTTGCGGCAGGTTCCAACGAAGTTTCTCTTTGGAATGCTGAAAATGGAAGCTGTCACCAGGTGCTGAGAGTGGCAAATTACGAAAGTGATGCTGAAATATCTGAAGTTCCTTGGGCCTTGGCTAAGTCATCAAGTAAAAGCTCCAAACCAGATCTGAGACGGAATGTCAATCCCCACTACAGAGTTGATGAACTAAACGAACCCCCTCCTCGTCTTCCTGGCATCCGTTCATTGCTGCCCTTACCTGGAGGTGATTTGTTAACTGGAGGAACCGACTTGAAGATACGTCGATGGGATCATTACAGTCCCGATCGAAGTTACTCTATTTGTGGACCAAACTTGAAGGGAGTCGGAAATGATGATTTCTATGCAACAAGATCTAGCTTTGGCGTGCAAGTTGTGCAGGAGACGAAAAGACGACCTCTAACATCGAAGCTGACAGCCAAGGCAGTTCTTGCGGCTGCTGCCACTGATTCTGCTGGCTGCCACCGTGATTCAATCCTAGCGTTGGCCTCGGTTAAGCTAAATCAGAGACACTTAATATCAAGCGGTAGAGATGGGGCAATCAAGGTTTGGAAGTGATATTCCGTTGTACATAGCACAATGCTAGTGAAGTTGTACATTATTATTAATCAAAAGCTTAGACTCATCCCATTATAACAATTGCCAAAGCCCTCGTCGTATCGTATGTATGTTGGTGTCATACCATGCTCGATTTGTATAGTTGGTACACATGTAAGAATGTAGATAGGGTCAGTCAAATTATCGACGGACGTGCCTCCCTTCGTTGATACTTGCTGTGGAATTGCGCATTACAGTATCATGTAAATTTTGGCATAGTTGTGATTCTAAATTCAAGTGTTATTCATTTTTACTGTTGGACTGCATTTGGACAGAATATGGTTT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:5.2.1
Ubiquitin Family	DWD

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP029338.1	1	-
Pyrus x bretschneideri	Pbr024701.2	1	-
Rosa multiflora	Rmu_sc0033274.1_g000001.1	1	-
Vitis vinifera	GSVIVT01015287001	1	protein kinase family protein / WD-40 repeat family protein
Populus trichocarpa	Potri.006G153100.1	1	protein kinase family protein / WD-40 repeat family protein
Nicotiana benthamiana	Niben101Scf00508g10015.1	1	Phosphoinositide 3-kinase regulatory subunit 4
Oryza sativa	LOC_Os02g55340.1	1	"WD domain and HEAT domain containing protein, putative, expressed"
Zea mays	GRMZM2G179662_P01	1	-
Zea mays	GRMZM2G111491_P01	0.821	-

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K08333	"phosphoinositide-3-kinase, regulatory subunit 4"	EC:2.7.11.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	31	292	1.70E-19

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.94462
SRR5252888	dormant buds	no	dormant buds(0 month)	7.68783
SRR5252889	dormant buds	no	dormant buds(0 month)	7.92214
SRR5252886	dormant buds	no	dormant buds(1 months)	8.59244
SRR5252887	dormant buds	no	dormant buds(1 months)	7.66371
SRR5252884	dormant buds	no	dormant buds(2 months)	11.1468
SRR5252882	dormant buds	no	dormant buds(3 months)	9.47204
SRR5252883	dormant buds	no	dormant buds(3 months)	7.53041
SRR5252880	dormant buds	no	dormant buds(4 months)	10.9322
SRR5252881	dormant buds	no	dormant buds(4 months)	8.77954
SRR5252878	bud break	no	bud break	6.50127
SRR5252879	bud break	no	bud break	5.46905
SRR3744766	flower	no	mature	6.11092
SRR3744767	flower	no	mature	6.00334
SRR3744768	flower	no	mature	5.89651
SRR6308190	stigmas	no	open flowers	6.11394
SRR6308181	styles	no	open flowers	5.02361
SRR6308188	filaments	no	open flowers	4.47676
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.30076
SRR6308192	pollen	no	open flowers	13.119
SRR6308191	petals	no	open flowers	4.00764
SRR6308194	sepals	no	open flowers	3.85537
SRR6308193	receptacles	no	open flowers	3.84963
SRR6308189	ovaries	no	open flowers	5.63234
SRR3384922	fruit	no	1 week after full bloom	2.47291
SRR3384921	fruit	no	2 week after full bloom	2.31769
SRR3384920	fruit	no	3 week after full bloom	2.01203
SRR3384919	fruit	no	4 week after full bloom	2.3899
SRR3384923	fruit	no	5 week after full bloom	2.71471
SRR3384918	fruit	no	6 week after full bloom	3.02203
SRR3384917	fruit	no	8 week after full bloom	3.14544
SRR3384916	fruit	no	10 week after full bloom	2.62307
SRR3384915	fruit	no	12 week after full bloom	2.19903
SRR3384914	fruit	no	14 week after full bloom	2.11761
SRR3384913	fruit	no	16 week after full bloom	3.09993
SRR3384912	fruit	no	18 week after full bloom	2.6249
SRR3384911	fruit	no	19 week after full bloom	4.24943
SRR3384910	fruit	no	20 week after full bloom	3.98007
SRR768128	whole fruit	no	25 days post anthesis	3.89599
SRR768129	whole fruit	no	35 days post anthesis	3.89852
SRR768130	whole fruit	no	60 days post anthesis	3.3184
SRR768131	whole fruit	no	87 days post anthesis	8.02319
SRR7343308	immature fruit flesh	no	immature	6.31716
SRR7343309	immature fruit flesh	no	immature	5.14504
SRR6320494	ripe fruit flesh	no	mature	5.14599
SRR5405143	ripe fruit peel	no	mature	8.7542
SRR6320572	ripe fruit peel	no	mature	6.15274
SRR7403504	fruit	uninfected	mature	4.74095
SRR7403506	fruit	uninfected	mature	4.36992
SRR7403507	fruit	uninfected	mature	4.60969
SRR7403500	fruit	infected with penicillium expansum	mature	3.3615
SRR7403501	fruit	infected with penicillium expansum	mature	2.79994
SRR7403508	fruit	infected with penicillium expansum	mature	2.83047
SRR7403502	fruit	infected with penicillium expansum	mature	4.0718
SRR7403503	fruit	infected with penicillium expansum	mature	3.76652
SRR7403505	fruit	infected with penicillium expansum	mature	4.106
SRR1613973	Central seeds	no	20DAPF	4.3926
SRR1613974	Central seeds	no	20DAPF	5.15299
SRR1613975	Central seeds	no	20DAPF	4.39253
SRR1613976	Lateral seeds	no	20DAPF	4.05448
SRR1613977	Lateral seeds	no	20DAPF	4.27209
SRR1613978	Lateral seeds	no	20DAPF	4.97908
SRR3744786	stem	no	mature	7.11305
SRR3744787	stem	no	mature	7.1463
SRR3744772	stem	no	mature	7.78806
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.68386
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.51698
SRR1089478	leaf	Virus-free	plantlets	3.17626
SRR1089477	leaf	ASGV-infected	plantlets	4.24947
SRR767660	leaf	uninfected	fully developed	3.46098
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.41028
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.6392
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.764069
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.27949
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.06064
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.71492
SRR6308182	young leaf	no	immature leaves	5.52103
SRR3744769	leaf	no	mature	5.39094
SRR3744770	leaf	no	mature	5.93611
SRR3744771	leaf	no	mature	5.99938
SRR5405145	leaf	no	mature	6.92955
SRR6320561	leaf	no	mature	3.95068