Gene detail

Detail information of MD02G1270000 Annotation

Gene ID	Annotation
MD02G1270000	suppressor of abi3-5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0235	histone methyltransferase activity (H3-K4 specific) RNA binding

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD02G1270000	mRNA	Chr02	32476857	32486718	-

Sequences

CDS:

MD02G1270000

TCTTTTTTGTCCAAACGAGCGACAGCCGGAAAGGCAGGAGAGGAGAGGAGAGGAGACTGGACACAGAAAGAGCAGGAGAGGGACGTCGAAACTAGAGAGGGCGAGCGAGCGAAAGCTGGCCTTTGATCTGAAGCTTAGGATCTGCAGAGGAAAGATATTCAAATTCTGCATGATATCGTCATCAAGAGCTTTCTTGGGTTTTGCTTGCATGCAAGAAAGAAATGGATCACGGTCGCTATGGTCATCAGCAAAGATGGGATAATAACAGCGCTCTGGAGGGGTATGGTGCAGTCCACGAGCCAAACTTTCGGGCCAATGGTTCATATGATGAGAGGAGGTTTATAGATGAAAGATGCTCAAGGGACAACGTCTATCCAAGAAACTCTTTTCACCGTGATGTTCTAGATGGGGATAACTATCCACCTCCACCTCCTCATGCTGTTGGTGTCTGGCCACACTCAAGAAGGAGAAGTTATGAGGAAGATCTTCCAATTGAGAGGGAAACTAGGCGACATGAGAAGCAATACATGGATTCATATCACGAGATGGATAACTTTCTTGATCATGACAGCGATACGTTTCAGGATTTTGATAAATTTCGGGATAGCTATCGTAGTGTCAACTATCGTGATCCTGGGTTTGACAGGATTGCTCGGTTTGGTGGACGTGATCGTGATGATTATGCTTATGATGATTTTGACTCTAGGCCCCGTTCTACCCATCAGAACAGGGAGGATAGTCGTGAAAGGGATTATGACTATGGTCGATACAGTTATGATTCTGATTACGATGGAAGTAGTAGGAGAGATGGCAATTGGAGGTGTCGGGGATCTCGTGAATCTCGTGACCGAGAGCGTGACAAGAAATGTTTGAGTAGGGAGACAGAACAGAGTCCACATAGAAGGCATGAGCAGTCCCGTTCTCGGTCCATTTCTCGTGGGCATGATGATCGCCCTAGATCAAGGTCCCCTAGAGGTCGAAGCCATGGGCGAAGTCATCGAGAGGACAGCTATGATGATGGACGGTACGAGGGAACTGATAAGCGAAGGGATCGTGATGAGAAACGCCATAGAGAACATTATTCTGTGGCCCCATCTGCAACTATTGTTGTGAAGGGTCTTTCCCAGAAGACAAATGAGGAAGATTTATACCAGATCCTTGCTGAATGGGGACCCCTTCGACATGTCCGTGTGATCAAAGAACGTAATTCTGGCACTTCTCGTGGTTTTGCGTTTATTGATTTTCCTTCTGTGGGAGCAGCACGCGCTATGATGGACAGCATGGGGGATGAAGGGCTTGTGGTCAATGACAGGAAGCTTTTTTTCGAGTATAGTAGTAAGCCAACTGGGGGTGCAGGTGGATCTTTTGGTCAGGAGAATTCCATTAAATTAGGCCATAATACCCATAATACCCATAAAAGCACCACAATGCCATCTGATTGGATGTGCATAAGTTGTGAATATGTTAATTTTGCACGGCGCACTTCCTGTTTTCAGTGCAATAAGGCACGAACTGAGGATGCTCCTGCAGCAGATATTTCTTTGTCCAATCAAATGACTTCAGCAAAGAAGGGGTCTGAAGCTGGTCCTACTCATGTCTTGGTTGTTCGTGGACTGGATGAAAATGCTGATGAGGAAATGCTGCGCTATGAGTTCTCCAAACATGCTGCAATTAAGGATCTTCGTCTTGTTAGAGACAAATTTACTCATGTTTCAAGGGGGTTTGCTTTTGTACATTTCCATTCGGTAGGAGATGCTACAAAAGCTCTTGAAGCAACAAATGGAACAACACTTGAGAGGAATGGGCAAATTTTGAGAGTAGCATATGCAAAGAGCGTTCTTGGTCCAGGATCTTCACAGTCAAGCAGCCTGGCAGCTGCTGCGATTGAGGCAGCCACATTTGCCCAACAGTACGATGCTGTTGGATGGGCTCCAAAGGAATATAATCCAGATGACAAACAATCCACTGCAGGGAACGAGCAAAATGGCGGGGAGATGGCAGTACAACAAGATGGTTTGGCTCCACAATCTGGTTTTGTGTGGGATGAGGCATCTGGTTATTACTATGATGCTGCTTCTGGGTTCTACTATGACCCAAATACAGGCCTTTACTATGATGGTAACAACGGCATTTGGTATACATATGACAACCAAACTCAGCAGTACATCCCTTGCACTGATCAAAATGATAACAAAACATCTGCTGATCAATCTGAGCTTTCCAAGGCATCGGATGGTTCAAGTAATAGAAAAGCAGTCATTTCTGCTCCAGCTACAACCTCAACATCTGAGAAGGCTGCATCATTACCAGATGCAGTCCAGGCTGCTGCAGCAGCAGCAATAGCTGCAGAGAAAAGGGAAAAGGAAAAGGCAAAAGAGATCAAACTGGCTTCAAAGAGCAGTATTTTGGCAAACAAGAAGAAAATGAGTAATGTGTTGACAATGTGGAAGCAAAGGAGTCACGAAGGGCAAGCAACCCGTGTAGCTCTGGATGACAACCAGCCAAGTGGTTCGGCTGATGATAGACCAGTTTCTTCTGTGCAGTCTGCAAAGAGCAAGTTTAAAACTAATGTGACAAAGGAGAATACTACATCCAGTTCAGGGGTTACTGCAACTGTTTCTGCTGCACAGATTACATCCAGTTCAGGGGTTACTGACACTGTTTCTGCTGCAGAGACTGTTGGTTTGGAGTGTTCAGTTATGCCAAGGCCTGTGAGTAACAGTATAAGAGGGACAGTGATGGGAGTCATAAGGGGATCTGGAAGAGGTGTAGTGAAATCAGATGCCTCGTTTTCAGGATCAAGTGTTGGAGTTTCCATGCCTTCAACTTCTGCTCCCGGCATGGCAGGTTCATCTGCATCAACAAATGCAGTCACCCCCACAGTTTTGACACCCTTTAGAACGGATGCATCTGCATTGGGTTCTTATACACCAGCTGTTGCTACTGGGAGTGGAAAGAGAAGATTTTCTGAAATGCCACTAACTCCTGCTTCTGCTCCTAAAGAACCTCATACTGCGTACAGGGATCGTGCAGCCGAGAGAAGAAGCTTATATGGTTCATCGGTGTCTTTTAGTGATGACGTATCTGACCTTGGTTTTGCAGAGTCAAATCAAGATTCTGCGTCAAGAAAGGGTTCTTTTGATTCAATGCCTTTTCCCCCTGGTGTTGGTGGAGGACGTGGGGTTGGAGATGCTAACATTGACAGTTACGAGGTGATTACAGCTGAAAAAGCAATTGATGAGAGCAATGTGGGCAACAAGATGCTTCGCAACATGGGCTGGCACGAAGGCTTGGGGTTAGGAAGAGATGGAAGCGGAATGGTAGAACCAGTGCAGGCTCAGTCCGTGGAACGGAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTAGATCCTACTCTCGAGGTGCAGGCCGGAGATAGTTACAAGACTCTCATTCAGAAGAAGGCACTGGCCAGGTTCCGGGAGATGTCTTAAGGCACCGATAAAGTTGATCTTTATTGTGTTCGACTTTTTCCTTG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.2G049800.1.p	1	suppressor of abi3-5
Prunus persica	Prupe.2G049800.2.p	1	suppressor of abi3-5
Prunus persica	Prupe.2G049800.11.p	0.983	suppressor of abi3-5
Prunus persica	Prupe.2G049800.3.p	0.977	suppressor of abi3-5
Pyrus communis	PCP008199.1	1	-
Pyrus x bretschneideri	Pbr024769.1	1	-
Rosa multiflora	Rmu_sc0004805.1_g000032.1	1	-
Rosa multiflora	Rmu_sc0016170.1_g000004.1	0.821	-
Rubus occidentalis	Ro07_G22616	1	-
Fragaria vesca	mrna00439.1	1	suppressor of abi3-5
Vitis vinifera	GSVIVT01013204001	1	suppressor of abi3-5
Populus trichocarpa	Potri.004G081800.1	1	suppressor of abi3-5
Nicotiana benthamiana	Niben101Scf00218g03011.1	1	RNA-binding protein 39
Nicotiana benthamiana	Niben101Scf09284g00001.1	0.769	RNA-binding protein 28
Oryza sativa	LOC_Os02g07070.1	1	"RNA recognition motif family protein, expressed"
Zea mays	GRMZM2G173777_P01	1	-
Zea mays	GRMZM2G151614_P01	0.746	-

Gene Ontology

GO term	Description	Category
GO:0000166	nucleotide binding	molecular_function
GO:0003676	nucleic acid binding	molecular_function
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K13094	RNA-binding protein 5/10	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.18	RRM_1	295	354	1.60E-12
PF00076.18	RRM_1	460	526	2.60E-16

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.1835
SRR5252888	dormant buds	no	dormant buds(0 month)	12.9335
SRR5252889	dormant buds	no	dormant buds(0 month)	13.9477
SRR5252886	dormant buds	no	dormant buds(1 months)	13.2797
SRR5252887	dormant buds	no	dormant buds(1 months)	9.7409
SRR5252884	dormant buds	no	dormant buds(2 months)	12.811
SRR5252882	dormant buds	no	dormant buds(3 months)	15.0224
SRR5252883	dormant buds	no	dormant buds(3 months)	10.3691
SRR5252880	dormant buds	no	dormant buds(4 months)	17.1136
SRR5252881	dormant buds	no	dormant buds(4 months)	17.6577
SRR5252878	bud break	no	bud break	12.2441
SRR5252879	bud break	no	bud break	11.9001
SRR3744766	flower	no	mature	8.80939
SRR3744767	flower	no	mature	9.60816
SRR3744768	flower	no	mature	9.66923
SRR6308190	stigmas	no	open flowers	6.97353
SRR6308181	styles	no	open flowers	6.44127
SRR6308188	filaments	no	open flowers	6.99677
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	9.71984
SRR6308192	pollen	no	open flowers	12.8917
SRR6308191	petals	no	open flowers	6.24876
SRR6308194	sepals	no	open flowers	6.0549
SRR6308193	receptacles	no	open flowers	5.95425
SRR6308189	ovaries	no	open flowers	6.29465
SRR3384922	fruit	no	1 week after full bloom	3.21032
SRR3384921	fruit	no	2 week after full bloom	3.18131
SRR3384920	fruit	no	3 week after full bloom	3.68466
SRR3384919	fruit	no	4 week after full bloom	3.14529
SRR3384923	fruit	no	5 week after full bloom	2.87756
SRR3384918	fruit	no	6 week after full bloom	3.09794
SRR3384917	fruit	no	8 week after full bloom	3.31644
SRR3384916	fruit	no	10 week after full bloom	2.98421
SRR3384915	fruit	no	12 week after full bloom	2.50202
SRR3384914	fruit	no	14 week after full bloom	3.28838
SRR3384913	fruit	no	16 week after full bloom	2.67115
SRR3384912	fruit	no	18 week after full bloom	3.40916
SRR3384911	fruit	no	19 week after full bloom	2.33213
SRR3384910	fruit	no	20 week after full bloom	2.97429
SRR768128	whole fruit	no	25 days post anthesis	7.25622
SRR768129	whole fruit	no	35 days post anthesis	3.38508
SRR768130	whole fruit	no	60 days post anthesis	3.61618
SRR768131	whole fruit	no	87 days post anthesis	4.9524
SRR7343308	immature fruit flesh	no	immature	7.47226
SRR7343309	immature fruit flesh	no	immature	9.18092
SRR6320494	ripe fruit flesh	no	mature	6.93498
SRR5405143	ripe fruit peel	no	mature	5.86455
SRR6320572	ripe fruit peel	no	mature	8.41154
SRR7403504	fruit	uninfected	mature	4.69058
SRR7403506	fruit	uninfected	mature	5.0479
SRR7403507	fruit	uninfected	mature	4.7475
SRR7403500	fruit	infected with penicillium expansum	mature	5.62275
SRR7403501	fruit	infected with penicillium expansum	mature	5.30545
SRR7403508	fruit	infected with penicillium expansum	mature	4.72867
SRR7403502	fruit	infected with penicillium expansum	mature	4.40865
SRR7403503	fruit	infected with penicillium expansum	mature	4.74396
SRR7403505	fruit	infected with penicillium expansum	mature	5.23584
SRR1613973	Central seeds	no	20DAPF	4.6073
SRR1613974	Central seeds	no	20DAPF	5.70689
SRR1613975	Central seeds	no	20DAPF	4.75876
SRR1613976	Lateral seeds	no	20DAPF	3.12102
SRR1613977	Lateral seeds	no	20DAPF	3.87224
SRR1613978	Lateral seeds	no	20DAPF	4.47558
SRR3744786	stem	no	mature	11.4051
SRR3744787	stem	no	mature	11.2254
SRR3744772	stem	no	mature	12.2804
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.37703
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.84399
SRR1089478	leaf	Virus-free	plantlets	4.66984
SRR1089477	leaf	ASGV-infected	plantlets	4.6041
SRR767660	leaf	uninfected	fully developed	3.72094
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	1.68634
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.89662
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.86059
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.16239
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.97194
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.95281
SRR6308182	young leaf	no	immature leaves	8.05947
SRR3744769	leaf	no	mature	9.22835
SRR3744770	leaf	no	mature	9.56013
SRR3744771	leaf	no	mature	10.7326
SRR5405145	leaf	no	mature	14.4927
SRR6320561	leaf	no	mature	7.23176