Gene detail

Detail information of MD03G1028000 Annotation

Gene ID	Annotation
MD03G1028000	F-box family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1028000	mRNA	Chr03	2298355	2300422	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	F-box

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP013869.1	1	-
Pyrus x bretschneideri	Pbr001605.1	1	-
Pyrus x bretschneideri	Pbr001604.1	1	-
Oryza sativa	LOC_Os03g25190.1	1	OsFBX87 - F-box domain containing protein
Oryza sativa	LOC_Os03g25250.1	1	OsFBX90 - F-box domain containing protein
Oryza sativa	LOC_Os03g46690.1	1	"OsFBX105 - F-box domain containing protein, expressed"
Oryza sativa	LOC_Os02g03980.1	0.739	OsFBX36 - F-box domain containing protein
Oryza sativa	LOC_Os02g03810.1	1	OsFBX34 - F-box domain containing protein
Oryza sativa	LOC_Os02g04000.1	1	OsFBX37 - F-box domain containing protein
Oryza sativa	LOC_Os06g07460.1	1	"OsFBX190 - F-box domain containing protein, expressed"
Oryza sativa	LOC_Os07g47160.1	1	OsFBX259 - F-box domain containing protein

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.29	F-box	4	44	5.40E-10
PF08268.8	FBA_3	230	349	1.10E-06

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.989877
SRR5252888	dormant buds	no	dormant buds(0 month)	2.42726
SRR5252889	dormant buds	no	dormant buds(0 month)	3.4992
SRR5252886	dormant buds	no	dormant buds(1 months)	1.64446
SRR5252887	dormant buds	no	dormant buds(1 months)	2.76725
SRR5252884	dormant buds	no	dormant buds(2 months)	1.27927
SRR5252882	dormant buds	no	dormant buds(3 months)	2.68271
SRR5252883	dormant buds	no	dormant buds(3 months)	2.35133
SRR5252880	dormant buds	no	dormant buds(4 months)	1.86252
SRR5252881	dormant buds	no	dormant buds(4 months)	2.58415
SRR5252878	bud break	no	bud break	3.01457
SRR5252879	bud break	no	bud break	3.40712
SRR3744766	flower	no	mature	1.39214
SRR3744767	flower	no	mature	1.53912
SRR3744768	flower	no	mature	1.2898
SRR6308190	stigmas	no	open flowers	0.740366
SRR6308181	styles	no	open flowers	0.318313
SRR6308188	filaments	no	open flowers	0.47818
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.493172
SRR6308192	pollen	no	open flowers	0.701642
SRR6308191	petals	no	open flowers	0.306448
SRR6308194	sepals	no	open flowers	0.396006
SRR6308193	receptacles	no	open flowers	1.42116
SRR6308189	ovaries	no	open flowers	1.15487
SRR3384922	fruit	no	1 week after full bloom	0.600584
SRR3384921	fruit	no	2 week after full bloom	0.650095
SRR3384920	fruit	no	3 week after full bloom	0.156115
SRR3384919	fruit	no	4 week after full bloom	0.384605
SRR3384923	fruit	no	5 week after full bloom	0.548634
SRR3384918	fruit	no	6 week after full bloom	0.508952
SRR3384917	fruit	no	8 week after full bloom	0.293919
SRR3384916	fruit	no	10 week after full bloom	0.429552
SRR3384915	fruit	no	12 week after full bloom	0.338828
SRR3384914	fruit	no	14 week after full bloom	0.492922
SRR3384913	fruit	no	16 week after full bloom	0.193527
SRR3384912	fruit	no	18 week after full bloom	0.181615
SRR3384911	fruit	no	19 week after full bloom	0.17419
SRR3384910	fruit	no	20 week after full bloom	0.272772
SRR768128	whole fruit	no	25 days post anthesis	1.70834
SRR768129	whole fruit	no	35 days post anthesis	0.938006
SRR768130	whole fruit	no	60 days post anthesis	1.69363
SRR768131	whole fruit	no	87 days post anthesis	0.81952
SRR7343308	immature fruit flesh	no	immature	1.93545
SRR7343309	immature fruit flesh	no	immature	0.965715
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.720423
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.848736
SRR7403506	fruit	uninfected	mature	0.480303
SRR7403507	fruit	uninfected	mature	0.342167
SRR7403500	fruit	infected with penicillium expansum	mature	0.940114
SRR7403501	fruit	infected with penicillium expansum	mature	0.465036
SRR7403508	fruit	infected with penicillium expansum	mature	0.754292
SRR7403502	fruit	infected with penicillium expansum	mature	0.194392
SRR7403503	fruit	infected with penicillium expansum	mature	0.144747
SRR7403505	fruit	infected with penicillium expansum	mature	0.390331
SRR1613973	Central seeds	no	20DAPF	5.29408
SRR1613974	Central seeds	no	20DAPF	5.72993
SRR1613975	Central seeds	no	20DAPF	4.93801
SRR1613976	Lateral seeds	no	20DAPF	4.57884
SRR1613977	Lateral seeds	no	20DAPF	4.94226
SRR1613978	Lateral seeds	no	20DAPF	5.0394
SRR3744786	stem	no	mature	2.63849
SRR3744787	stem	no	mature	2.28727
SRR3744772	stem	no	mature	2.60363
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.95279
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.55962
SRR1089478	leaf	Virus-free	plantlets	0.524607
SRR1089477	leaf	ASGV-infected	plantlets	2.03466
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.15405
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.553751
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.804669
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.135693
SRR6308182	young leaf	no	immature leaves	2.51965
SRR3744769	leaf	no	mature	1.1555
SRR3744770	leaf	no	mature	1.45992
SRR3744771	leaf	no	mature	1.38468
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0.137459