Gene detail

Detail information of MD03G1095200 Annotation

Gene ID	Annotation
MD03G1095200	U-box domain-containing protein kinase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0275	ATPase activity ATP binding positive regulation of cell communication regulation of meristem development plasmodesmata-mediated intercellular transport enzyme activator activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1095200	mRNA	Chr03	8069684	8075203	-

Sequences

CDS:

MD03G1095200

TTTTCCAGTGTCACTGTCAAGTCAGCACCAATGGTCAAGCCTCCCTTGGAAACAAAGAACTCCCAACAAATCCATACAAATTCCACGAACTCTCACTCCTTTAATCATCAATTCCAATCCCCACATGCGCCCTTCCCACTTGCTTCCCAACAACACCAACACCCACAAACCTCAGACCCCAACTCCGCCACCACCGGCGGAGCTGCCTCCGCCTCACCCTTCCATTTCCATGGAGCTCGTACAGCCTTCGCACCCGCACCATGGCCCGGTGGCGGAATCCCTTTCTGGGTTCTCTTCTCCGGTGAGTTTCCGACGTGGGTTTGACCGGCCGGCGACTTCCTCCTCTCAGTCGCTTGAGATTTTTGAAGAAGACGGTGGTGGTGGTGGTGACAAGGTGCACGTGGCGGTTGGGAAGTCTGTGGAGAAAGCTTTGAGCTTGCTTCGTTGGACTTTCAAGCACTTTGGGTGTAAAGAAATTTGTCTTCTTCATGTTCATAAGCCTTCTCAGCACATTCCAACTCTCTTAGGAAAACTGCCCGCAGGTCAGGCAAATGCCGAGGTGGTGTCGGCTTTCAGGAGGGAGGAGAAGGAGCGGAAAATGAAGCTGTTGCAAAATTATTTGAGGGCTTGCTCTATTGCAAAGGTTAAAGCAAGCATTGTTATGGTTGAAGCTGATGAAATTCAGAAAGGAATTGTAGAGTTGGTCAACAAAAATGGTGTTAGGAAGCTTGTTATGGGAGCTGTGCCAGAAAATTGCCTGAAGGTGAAAAAGAGCTCCAGCAAGGCAAATTATGCAGCCAAATGTGCTCCATTGTTCTGTGAAATATGGTTTATCAACAAAGGGAAACATGTCTGGACGAGAGATGCTTCAGAAGGCCAAAGTTTTCCAACCTCATGTAGGCAACTGCAGGTTGCATCTGCAGAAAGTTTGAGGTCTGGATCGTTTGAAAATAGAGAGAATACGAACCTCCGTGAAGCATCGCCAACTTTAGCTTGTCCTACAGATACGTGCTTACCCTACAATATTCATACTTCAACTAGTACAAGTACTAGCTCTGGTTCTGGATATATTTCTGCTGAGGTAAGGATGTCCTCAGATTCTGATTTAACCGTTGAGGAACAGAGCTTATATCGTATGCTTACGGAAGCTACAACAGAAGCTGAGACCTCAAAGGACAAGGCATTTGCAGAGCTATCGAAGTGCAAAAGTTTAGAATCAGAAGCTATGAATGCTATAAACAAGGCCAAGGCATTTGAGTTAGCCCGTGCCCGAGAAGTTAAGCTTAGAAAAGAGGCTGGGGATGCCCTGAGAACCACGATCGAGGAAGAACAAAAACTCTTGGAAGAGAAGGAAGAAATTAGTGGTGAGATAAGGAGGGCCATGAGAAATATTGCCCTTCTAGACGTCCGAGCACAGGAAGCAAGTCGAAGGGTTGATGAAGTTTCTGGGGAAGTGAAGCAAATTCAGGCTTCGATTGCAACTCTTTGGCAGGAAAAACAGGGTATTCAAAGACAGAAGATGGAAGCCCTTCGCTGGATTGAGCGGTGGAGAAATCATCGACAAGCTGGAGCCGCAAACTGCAACGGGCTCATTGGGTTTGTTGAAGAACTGCCCAAGTTAGCGGAATTCTCATTGTCAGATTTGCAGACTGCAACATGCAATTTTTCTGAGAGCTTTAAAATCGGGCAGGGAGGATATGGTTGTGTTTATAAGGGGGAAATGCTGGGCAGAACTGTTGCCATAAGGAAGTTGCATCCACATAACATGCAAGAACAAGCCGAGTTTCAGCAAGAGGTGCAAGTTCTTGGAAAATTACAGCATCGTCATCTTGTGACCTTGCTTGGTGTGTGTCCAGAAGCATGGTCGCTTGTATACGAGTACTTATCAAACGGGAGCCTGCAAGACCATCTTTTTAGGAAAAGCAATATATCTCCAATGACATGGAAGACCCGAACACGGATAATTGCTGAAATCTCTAGTGCCCTTTGCTTCTTGCACTCATCTAAACCTGAGAAGATTGTCCATGGTGATTTGAAGCCGCAAAACATACTACTAGATTCTGAACTCAGATGCAAGATCTGTGATTTCGGGATTTGCAGGCTGGTAACTGAAGACAATCTTTACACACGAAGTTTCCGCCGGGGGGCTGAGCCAAAGGGTGCTTTTCCTTACACAGATCCAGAGGTGCAGAGAATCGGAGTCCTGACGCACAAGTCTGATATTTATTCCTTTGGGTTGATCATTCTGCAGTTAGTCACCAGACGGCCGCCAGTTGGCTTAGCTGGTGAGGTGCGCAAGGCAGTTTTAGGTGGAAACTTGGCATCAATCCTGGATTCTTCCGCTGGAGAATGGCCTATATCTGTGGCAACACGATTGGTAGATCTTGGTTTGCAATGCTGTGAATTGAATAGTAGGGAAAGACCAGAGCTTACACCAGCTTTAGTGAGGGAATTGGAGCAGTTGCATGCCTCGGAAGAGCGACCAGTGCCATCTTTTTTCTTGTGTCCGATCCTTCAGGAAATAATGCATGACCCTCAGTTGGCAGCTGATGGCTTCACTTACGAAGGTGAAGCTTTGCGTGGATGGTTACAAAATTGTCGCGAAACTTCTCCAATGACCAATTTGAAATTGAGTCACTTGCATCTCACTCCTAACCACGCCCTACGGCTTGCTATTCAAGATTGGCTTTGCAAGACTTGAAATCTCAGTCCTTTCATGTAAGTATGTCGTCGCTATGTCATTCATTCGGACATTCACACGTGTAGATTTTCGTTGTAACGATTGTATATCATGCAATGATAGGGAAAGTGCTTGTTTTATAAAAGCTACCAAAATTTGAAAGCATTGTAAAGTTAACGAGATACAATTACACTATTGAAATAGCCAGATTAGTTTTCTAATGATACGACTGTATTAGCTA

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.14.2
Ubiquitin Family	U-box

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G078700.1.p	1	U-box domain-containing protein kinase family protein
Pyrus communis	PCP026508.1	1	-
Pyrus x bretschneideri	Pbr020820.1	1	-
Rosa multiflora	Rmu_sc0000806.1_g000029.1	1	-
Rubus occidentalis	Ro03_G16258	1	-
Fragaria vesca	mrna14109.1	1	U-box domain-containing protein kinase family protein
Vitis vinifera	GSVIVT01024979001	1	U-box domain-containing protein kinase family protein
Solanum lycopersicum	Solyc11g065950.1.1	1	U-box domain-containing protein kinase family protein
Populus trichocarpa	Potri.009G030400.1	1	U-box domain-containing protein kinase family protein
Nicotiana benthamiana	Niben101Ctg15030g00002.1	1	Receptor-like protein kinase
Oryza sativa	LOC_Os10g01060.1	1	"protein kinase family protein, putative, expressed"
Zea mays	GRMZM2G018059_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process
GO:0004842	ubiquitin-protein transferase activity	molecular_function
GO:0000151	ubiquitin ligase complex	cellular component
GO:0016567	protein ubiquitination	biological_process
GO:0006950	response to stress	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	516	772	1.60E-40
PF04564.11	U-box	788	857	9.70E-17

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.553772
SRR5252888	dormant buds	no	dormant buds(0 month)	5.72379
SRR5252889	dormant buds	no	dormant buds(0 month)	7.19904
SRR5252886	dormant buds	no	dormant buds(1 months)	4.43181
SRR5252887	dormant buds	no	dormant buds(1 months)	4.67334
SRR5252884	dormant buds	no	dormant buds(2 months)	6.17047
SRR5252882	dormant buds	no	dormant buds(3 months)	6.48334
SRR5252883	dormant buds	no	dormant buds(3 months)	6.67936
SRR5252880	dormant buds	no	dormant buds(4 months)	5.35281
SRR5252881	dormant buds	no	dormant buds(4 months)	5.8761
SRR5252878	bud break	no	bud break	3.39813
SRR5252879	bud break	no	bud break	2.59873
SRR3744766	flower	no	mature	3.23591
SRR3744767	flower	no	mature	3.55102
SRR3744768	flower	no	mature	4.03128
SRR6308190	stigmas	no	open flowers	0.566312
SRR6308181	styles	no	open flowers	0.609641
SRR6308188	filaments	no	open flowers	1.09604
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.188886
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.87663
SRR6308194	sepals	no	open flowers	1.36385
SRR6308193	receptacles	no	open flowers	1.36984
SRR6308189	ovaries	no	open flowers	1.3104
SRR3384922	fruit	no	1 week after full bloom	3.03451
SRR3384921	fruit	no	2 week after full bloom	3.16522
SRR3384920	fruit	no	3 week after full bloom	1.55127
SRR3384919	fruit	no	4 week after full bloom	1.09308
SRR3384923	fruit	no	5 week after full bloom	0.600605
SRR3384918	fruit	no	6 week after full bloom	0.771459
SRR3384917	fruit	no	8 week after full bloom	0.482641
SRR3384916	fruit	no	10 week after full bloom	0.385841
SRR3384915	fruit	no	12 week after full bloom	0.256794
SRR3384914	fruit	no	14 week after full bloom	0.359744
SRR3384913	fruit	no	16 week after full bloom	0.26075
SRR3384912	fruit	no	18 week after full bloom	0.12235
SRR3384911	fruit	no	19 week after full bloom	0.234696
SRR3384910	fruit	no	20 week after full bloom	0.206731
SRR768128	whole fruit	no	25 days post anthesis	0.598905
SRR768129	whole fruit	no	35 days post anthesis	1.20576
SRR768130	whole fruit	no	60 days post anthesis	0.612597
SRR768131	whole fruit	no	87 days post anthesis	0.507217
SRR7343308	immature fruit flesh	no	immature	5.04813
SRR7343309	immature fruit flesh	no	immature	2.92324
SRR6320494	ripe fruit flesh	no	mature	0.156573
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.819445
SRR7403504	fruit	uninfected	mature	0.26078
SRR7403506	fruit	uninfected	mature	0.259271
SRR7403507	fruit	uninfected	mature	0.1924
SRR7403500	fruit	infected with penicillium expansum	mature	19.3874
SRR7403501	fruit	infected with penicillium expansum	mature	22.2397
SRR7403508	fruit	infected with penicillium expansum	mature	20.4011
SRR7403502	fruit	infected with penicillium expansum	mature	14.4285
SRR7403503	fruit	infected with penicillium expansum	mature	15.7126
SRR7403505	fruit	infected with penicillium expansum	mature	16.0003
SRR1613973	Central seeds	no	20DAPF	0.850954
SRR1613974	Central seeds	no	20DAPF	0.851397
SRR1613975	Central seeds	no	20DAPF	0.701248
SRR1613976	Lateral seeds	no	20DAPF	0.52282
SRR1613977	Lateral seeds	no	20DAPF	0.686614
SRR1613978	Lateral seeds	no	20DAPF	0.647969
SRR3744786	stem	no	mature	4.19572
SRR3744787	stem	no	mature	4.03692
SRR3744772	stem	no	mature	4.21227
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.90982
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.62182
SRR1089478	leaf	Virus-free	plantlets	4.73627
SRR1089477	leaf	ASGV-infected	plantlets	2.88956
SRR767660	leaf	uninfected	fully developed	2.26833
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.23604
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.39512
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	14.9262
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	15.2169
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.79145
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.64236
SRR6308182	young leaf	no	immature leaves	2.26774
SRR3744769	leaf	no	mature	4.43689
SRR3744770	leaf	no	mature	4.39657
SRR3744771	leaf	no	mature	4.6951
SRR5405145	leaf	no	mature	18.8136
SRR6320561	leaf	no	mature	18.6748