Gene detail

Detail information of MD03G1100500 Annotation

Gene ID	Annotation
MD03G1100500	ribosomal protein L23AB

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1100500	mRNA	Chr03	8587801	8590327	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Rosa multiflora	Rmu_ssc0000472.1_g000011.1	1	-
Fragaria vesca	mrna13978.1	1	ribosomal protein L23AB
Populus trichocarpa	Potri.010G210300.3	1	ribosomal protein L23AB
Populus trichocarpa	Potri.008G050200.2	0.636	ribosomal protein L23AB
Oryza sativa	LOC_Os04g42270.1	1	"60S ribosomal protein L23A, putative, expressed"
Oryza sativa	LOC_Os01g24690.2	1	"60S ribosomal protein L23A, putative, expressed"
Zea mays	GRMZM2G166659_P01	1	60S ribosomal protein L23a; 60S ribosomal protein L23a isoform 1; 60S ribosomal protein L23a isoform 2; 60S ribosomal protein L23a isoform 3;
Zea mays	GRMZM2G124411_P01	0.698	60S ribosomal protein L23a; 60S ribosomal protein L23a isoform 1; 60S ribosomal protein L23a isoform 2; 60S ribosomal protein L23a isoform 3; 60S ribosomal protein L23a isoform 4;

Gene Ontology

GO term	Description	Category
GO:0000166	nucleotide binding	molecular_function
GO:0003735	structural constituent of ribosome	molecular_function
GO:0005840	ribosome	cellular component
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02893	large subunit ribosomal protein L23Ae	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	25.8715
SRR5252888	dormant buds	no	dormant buds(0 month)	29.2909
SRR5252889	dormant buds	no	dormant buds(0 month)	21.1594
SRR5252886	dormant buds	no	dormant buds(1 months)	24.6368
SRR5252887	dormant buds	no	dormant buds(1 months)	18.831
SRR5252884	dormant buds	no	dormant buds(2 months)	26.493
SRR5252882	dormant buds	no	dormant buds(3 months)	34.1833
SRR5252883	dormant buds	no	dormant buds(3 months)	32.8663
SRR5252880	dormant buds	no	dormant buds(4 months)	47.7325
SRR5252881	dormant buds	no	dormant buds(4 months)	41.4462
SRR5252878	bud break	no	bud break	30.6959
SRR5252879	bud break	no	bud break	60.5568
SRR3744766	flower	no	mature	12.9063
SRR3744767	flower	no	mature	13.7713
SRR3744768	flower	no	mature	12.3363
SRR6308190	stigmas	no	open flowers	4.31212
SRR6308181	styles	no	open flowers	6.33796
SRR6308188	filaments	no	open flowers	10.8528
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.81294
SRR6308192	pollen	no	open flowers	0.861169
SRR6308191	petals	no	open flowers	11.1437
SRR6308194	sepals	no	open flowers	7.88849
SRR6308193	receptacles	no	open flowers	20.6139
SRR6308189	ovaries	no	open flowers	10.3783
SRR3384922	fruit	no	1 week after full bloom	25.3474
SRR3384921	fruit	no	2 week after full bloom	24.4532
SRR3384920	fruit	no	3 week after full bloom	19.4167
SRR3384919	fruit	no	4 week after full bloom	19.0038
SRR3384923	fruit	no	5 week after full bloom	14.1314
SRR3384918	fruit	no	6 week after full bloom	15.9192
SRR3384917	fruit	no	8 week after full bloom	12.8489
SRR3384916	fruit	no	10 week after full bloom	11.5785
SRR3384915	fruit	no	12 week after full bloom	17.107
SRR3384914	fruit	no	14 week after full bloom	11.6005
SRR3384913	fruit	no	16 week after full bloom	11.1214
SRR3384912	fruit	no	18 week after full bloom	10.5114
SRR3384911	fruit	no	19 week after full bloom	6.86411
SRR3384910	fruit	no	20 week after full bloom	6.66202
SRR768128	whole fruit	no	25 days post anthesis	15.1148
SRR768129	whole fruit	no	35 days post anthesis	11.9827
SRR768130	whole fruit	no	60 days post anthesis	7.44078
SRR768131	whole fruit	no	87 days post anthesis	4.59261
SRR7343308	immature fruit flesh	no	immature	9.53741
SRR7343309	immature fruit flesh	no	immature	10.3138
SRR6320494	ripe fruit flesh	no	mature	5.68541
SRR5405143	ripe fruit peel	no	mature	9.55431
SRR6320572	ripe fruit peel	no	mature	2.94819
SRR7403504	fruit	uninfected	mature	6.75117
SRR7403506	fruit	uninfected	mature	7.05282
SRR7403507	fruit	uninfected	mature	7.62551
SRR7403500	fruit	infected with penicillium expansum	mature	5.88051
SRR7403501	fruit	infected with penicillium expansum	mature	6.86679
SRR7403508	fruit	infected with penicillium expansum	mature	5.2596
SRR7403502	fruit	infected with penicillium expansum	mature	5.10298
SRR7403503	fruit	infected with penicillium expansum	mature	4.63094
SRR7403505	fruit	infected with penicillium expansum	mature	5.44348
SRR1613973	Central seeds	no	20DAPF	25.2102
SRR1613974	Central seeds	no	20DAPF	25.4366
SRR1613975	Central seeds	no	20DAPF	25.5317
SRR1613976	Lateral seeds	no	20DAPF	22.7206
SRR1613977	Lateral seeds	no	20DAPF	25.2587
SRR1613978	Lateral seeds	no	20DAPF	24.3601
SRR3744786	stem	no	mature	21.2722
SRR3744787	stem	no	mature	23.1451
SRR3744772	stem	no	mature	21.3344
SRX765691	seedling shoot apex	no	4-6 week old seedling	19.1142
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	20.4759
SRR1089478	leaf	Virus-free	plantlets	5.1589
SRR1089477	leaf	ASGV-infected	plantlets	6.20265
SRR767660	leaf	uninfected	fully developed	4.70817
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	11.9015
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.28317
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	8.44815
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	21.2507
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.22831
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.76344
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.83751
SRR6308182	young leaf	no	immature leaves	30.7181
SRR3744769	leaf	no	mature	15.4948
SRR3744770	leaf	no	mature	14.2351
SRR3744771	leaf	no	mature	14.1959
SRR5405145	leaf	no	mature	6.66695
SRR6320561	leaf	no	mature	6.74876