Gene detail

Detail information of MD03G1104500 Annotation

Gene ID	Annotation
MD03G1104500	histidine biosynthesis bifunctional protein (HISIE)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1104500	mRNA	Chr03	8977453	8980698	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G31860.1	1	AT-IE;HISN2\|HISTIDINE BIOSYNTHESIS 2
Rosa multiflora	Rmu_sc0012322.1_g000002.1	1	-
Fragaria vesca	mrna13632.1	1	histidine biosynthesis bifunctional protein (HISIE)
Vitis vinifera	GSVIVT01032967001	1	histidine biosynthesis bifunctional protein (HISIE)
Populus trichocarpa	Potri.001G391400.3	1	histidine biosynthesis bifunctional protein (HISIE)
Nicotiana benthamiana	Niben101Scf00449g02001.1	1	Phosphoribosyl-AMP cyclohydrolase
Nicotiana benthamiana	Niben101Scf09016g00004.1	0.926	Phosphoribosyl-AMP cyclohydrolase 2
Oryza sativa	LOC_Os01g16940.1	1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"
Zea mays	GRMZM2G082214_P01	1	Histidine biosynthesis protein hisIE

Gene Ontology

GO term	Description	Category
GO:0000105	histidine biosynthetic process	biological_process
GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	molecular_function
GO:0004636	phosphoribosyl-ATP diphosphatase activity	molecular_function

KEGG

KO	Description	Enzyme
K11755	phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase	EC:3.6.1.31 3.5.4.19

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.45221
SRR5252888	dormant buds	no	dormant buds(0 month)	0.226131
SRR5252889	dormant buds	no	dormant buds(0 month)	2.44496
SRR5252886	dormant buds	no	dormant buds(1 months)	3.06405
SRR5252887	dormant buds	no	dormant buds(1 months)	1.22118
SRR5252884	dormant buds	no	dormant buds(2 months)	1.62519
SRR5252882	dormant buds	no	dormant buds(3 months)	1.62997
SRR5252883	dormant buds	no	dormant buds(3 months)	1.59852
SRR5252880	dormant buds	no	dormant buds(4 months)	1.62673
SRR5252881	dormant buds	no	dormant buds(4 months)	3.43064
SRR5252878	bud break	no	bud break	2.10635
SRR5252879	bud break	no	bud break	1.7967
SRR3744766	flower	no	mature	0.447537
SRR3744767	flower	no	mature	0.815049
SRR3744768	flower	no	mature	0.609893
SRR6308190	stigmas	no	open flowers	0.898742
SRR6308181	styles	no	open flowers	1.43347
SRR6308188	filaments	no	open flowers	1.99197
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.170855
SRR6308192	pollen	no	open flowers	0.975031
SRR6308191	petals	no	open flowers	1.84122
SRR6308194	sepals	no	open flowers	1.0983
SRR6308193	receptacles	no	open flowers	2.29894
SRR6308189	ovaries	no	open flowers	1.15595
SRR3384922	fruit	no	1 week after full bloom	3.58633
SRR3384921	fruit	no	2 week after full bloom	3.05602
SRR3384920	fruit	no	3 week after full bloom	1.81816
SRR3384919	fruit	no	4 week after full bloom	2.75473
SRR3384923	fruit	no	5 week after full bloom	2.17246
SRR3384918	fruit	no	6 week after full bloom	2.48952
SRR3384917	fruit	no	8 week after full bloom	2.77269
SRR3384916	fruit	no	10 week after full bloom	1.86768
SRR3384915	fruit	no	12 week after full bloom	0.868143
SRR3384914	fruit	no	14 week after full bloom	0.765432
SRR3384913	fruit	no	16 week after full bloom	0.18031
SRR3384912	fruit	no	18 week after full bloom	0.423029
SRR3384911	fruit	no	19 week after full bloom	0.162294
SRR3384910	fruit	no	20 week after full bloom	0.127072
SRR768128	whole fruit	no	25 days post anthesis	1.64993
SRR768129	whole fruit	no	35 days post anthesis	2.41583
SRR768130	whole fruit	no	60 days post anthesis	0.843827
SRR768131	whole fruit	no	87 days post anthesis	1.14328
SRR7343308	immature fruit flesh	no	immature	1.80453
SRR7343309	immature fruit flesh	no	immature	1.35127
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.126925
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0.0530649
SRR7403500	fruit	infected with penicillium expansum	mature	0.109348
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0.090442
SRR7403503	fruit	infected with penicillium expansum	mature	0.202033
SRR7403505	fruit	infected with penicillium expansum	mature	0.181603
SRR1613973	Central seeds	no	20DAPF	5.60603
SRR1613974	Central seeds	no	20DAPF	4.36605
SRR1613975	Central seeds	no	20DAPF	4.48803
SRR1613976	Lateral seeds	no	20DAPF	5.54475
SRR1613977	Lateral seeds	no	20DAPF	4.92238
SRR1613978	Lateral seeds	no	20DAPF	4.98428
SRR3744786	stem	no	mature	0.495924
SRR3744787	stem	no	mature	0.350639
SRR3744772	stem	no	mature	0.27977
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.24216
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.52199
SRR1089478	leaf	Virus-free	plantlets	0.584735
SRR1089477	leaf	ASGV-infected	plantlets	0.793753
SRR767660	leaf	uninfected	fully developed	0.444622
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	8.35314
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.24166
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.82974
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	1.85035
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.446756
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.755999
SRR6308182	young leaf	no	immature leaves	5.5149
SRR3744769	leaf	no	mature	0.325283
SRR3744770	leaf	no	mature	0.229073
SRR3744771	leaf	no	mature	0.489463
SRR5405145	leaf	no	mature	1.30387
SRR6320561	leaf	no	mature	1.91032