Gene detail

Detail information of MD03G1107100 Annotation

Gene ID	Annotation
MD03G1107100	ATP binding

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1107100	mRNA	Chr03	9218819	9228921	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP005999.1	1	-
Pyrus x bretschneideri	Pbr033977.1	1	-
Vitis vinifera	GSVIVT01036255001	1	ATP binding;nucleic acid binding;helicases

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.39486
SRR5252888	dormant buds	no	dormant buds(0 month)	2.4297
SRR5252889	dormant buds	no	dormant buds(0 month)	3.80228
SRR5252886	dormant buds	no	dormant buds(1 months)	2.05763
SRR5252887	dormant buds	no	dormant buds(1 months)	2.24441
SRR5252884	dormant buds	no	dormant buds(2 months)	2.84907
SRR5252882	dormant buds	no	dormant buds(3 months)	3.59488
SRR5252883	dormant buds	no	dormant buds(3 months)	3.81679
SRR5252880	dormant buds	no	dormant buds(4 months)	3.67971
SRR5252881	dormant buds	no	dormant buds(4 months)	3.57378
SRR5252878	bud break	no	bud break	3.20696
SRR5252879	bud break	no	bud break	4.2166
SRR3744766	flower	no	mature	0.768557
SRR3744767	flower	no	mature	0.52083
SRR3744768	flower	no	mature	0.4551
SRR6308190	stigmas	no	open flowers	0.660763
SRR6308181	styles	no	open flowers	0.505375
SRR6308188	filaments	no	open flowers	0.379166
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.978696
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.729559
SRR6308194	sepals	no	open flowers	0.628465
SRR6308193	receptacles	no	open flowers	1.37837
SRR6308189	ovaries	no	open flowers	0.865757
SRR3384922	fruit	no	1 week after full bloom	0.992345
SRR3384921	fruit	no	2 week after full bloom	1.54117
SRR3384920	fruit	no	3 week after full bloom	0.57571
SRR3384919	fruit	no	4 week after full bloom	0.911779
SRR3384923	fruit	no	5 week after full bloom	1.22838
SRR3384918	fruit	no	6 week after full bloom	0.76416
SRR3384917	fruit	no	8 week after full bloom	0.464527
SRR3384916	fruit	no	10 week after full bloom	0.528026
SRR3384915	fruit	no	12 week after full bloom	1.07101
SRR3384914	fruit	no	14 week after full bloom	1.29841
SRR3384913	fruit	no	16 week after full bloom	0.458792
SRR3384912	fruit	no	18 week after full bloom	1.00462
SRR3384911	fruit	no	19 week after full bloom	0.871784
SRR3384910	fruit	no	20 week after full bloom	1.04184
SRR768128	whole fruit	no	25 days post anthesis	0.98746
SRR768129	whole fruit	no	35 days post anthesis	1.71218
SRR768130	whole fruit	no	60 days post anthesis	1.43531
SRR768131	whole fruit	no	87 days post anthesis	1.80062
SRR7343308	immature fruit flesh	no	immature	2.03852
SRR7343309	immature fruit flesh	no	immature	0.254218
SRR6320494	ripe fruit flesh	no	mature	2.19807
SRR5405143	ripe fruit peel	no	mature	1.27881
SRR6320572	ripe fruit peel	no	mature	0.849036
SRR7403504	fruit	uninfected	mature	1.74979
SRR7403506	fruit	uninfected	mature	1.89904
SRR7403507	fruit	uninfected	mature	1.71364
SRR7403500	fruit	infected with penicillium expansum	mature	0.743412
SRR7403501	fruit	infected with penicillium expansum	mature	0.919338
SRR7403508	fruit	infected with penicillium expansum	mature	0.861567
SRR7403502	fruit	infected with penicillium expansum	mature	0.768596
SRR7403503	fruit	infected with penicillium expansum	mature	1.08738
SRR7403505	fruit	infected with penicillium expansum	mature	0.617322
SRR1613973	Central seeds	no	20DAPF	5.24751
SRR1613974	Central seeds	no	20DAPF	4.84527
SRR1613975	Central seeds	no	20DAPF	4.0768
SRR1613976	Lateral seeds	no	20DAPF	3.94673
SRR1613977	Lateral seeds	no	20DAPF	3.95584
SRR1613978	Lateral seeds	no	20DAPF	4.64036
SRR3744786	stem	no	mature	0.355818
SRR3744787	stem	no	mature	0.430162
SRR3744772	stem	no	mature	0.44854
SRX765691	seedling shoot apex	no	4-6 week old seedling	1.56742
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.74513
SRR1089478	leaf	Virus-free	plantlets	0.664376
SRR1089477	leaf	ASGV-infected	plantlets	1.54605
SRR767660	leaf	uninfected	fully developed	1.01105
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.03755
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.08834
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.20702
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.255276
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.322262
SRR6308182	young leaf	no	immature leaves	2.21025
SRR3744769	leaf	no	mature	0.424532
SRR3744770	leaf	no	mature	0.361223
SRR3744771	leaf	no	mature	0.501952
SRR5405145	leaf	no	mature	0.147731
SRR6320561	leaf	no	mature	0.435794