Gene detail

Detail information of MD03G1110000 Annotation

Gene ID	Annotation
MD03G1110000	Dof-type zinc finger DNA-binding family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0530	C2C2-Dof nucleolus elongation factor 1-gamma acetyl-CoA acyltransferase 1 [EC:2.3.1.16] peroxisome eukaryotic translation elongation factor 1 complex 4-coumarate--CoA ligase [EC:6.2.1.12] glycogen synthase kinase 3 beta [EC:2.7.11.26] GSK3/Shaggy Like Protein Kinase Family acetyl-CoA C-acyltransferase activity fatty-acyl-CoA synthase activity glyoxysome organization jasmonic acid biosynthetic process 4-coumarate-CoA ligase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1110000	mRNA	Chr03	9569797	9572071	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	C2C2-Dof

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G28510.1	1	Dof-type zinc finger DNA-binding family protein
Pyrus communis	PCP021762.1	1	-
Pyrus x bretschneideri	Pbr033924.1	1	-
Rosa multiflora	Rmu_sc0001366.1_g000022.1	1	-
Rubus occidentalis	Ro03_G02155	1	-
Fragaria vesca	mrna25330.1	1	Dof-type zinc finger DNA-binding family protein
Vitis vinifera	GSVIVT01025119001	1	Dof-type zinc finger DNA-binding family protein
Nicotiana benthamiana	Niben101Scf06127g01010.1	1	Dof-type zinc finger DNA-binding family protein LENGTH=288
Nicotiana benthamiana	Niben101Scf00482g09010.1	0.758	Dof-type zinc finger DNA-binding family protein LENGTH=245
Zea mays	GRMZM2G146283_P01	1	protein_coding

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.9469
SRR5252888	dormant buds	no	dormant buds(0 month)	4.20213
SRR5252889	dormant buds	no	dormant buds(0 month)	5.12756
SRR5252886	dormant buds	no	dormant buds(1 months)	4.55506
SRR5252887	dormant buds	no	dormant buds(1 months)	2.87443
SRR5252884	dormant buds	no	dormant buds(2 months)	3.74485
SRR5252882	dormant buds	no	dormant buds(3 months)	6.05787
SRR5252883	dormant buds	no	dormant buds(3 months)	4.35671
SRR5252880	dormant buds	no	dormant buds(4 months)	4.59481
SRR5252881	dormant buds	no	dormant buds(4 months)	6.10663
SRR5252878	bud break	no	bud break	8.31008
SRR5252879	bud break	no	bud break	15.4251
SRR3744766	flower	no	mature	3.09766
SRR3744767	flower	no	mature	2.75617
SRR3744768	flower	no	mature	3.46607
SRR6308190	stigmas	no	open flowers	4.0346
SRR6308181	styles	no	open flowers	8.58955
SRR6308188	filaments	no	open flowers	4.71572
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.55927
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	9.64823
SRR6308194	sepals	no	open flowers	4.93241
SRR6308193	receptacles	no	open flowers	8.1129
SRR6308189	ovaries	no	open flowers	6.39271
SRR3384922	fruit	no	1 week after full bloom	12.9874
SRR3384921	fruit	no	2 week after full bloom	25.9062
SRR3384920	fruit	no	3 week after full bloom	11.946
SRR3384919	fruit	no	4 week after full bloom	14.532
SRR3384923	fruit	no	5 week after full bloom	10.448
SRR3384918	fruit	no	6 week after full bloom	13.0581
SRR3384917	fruit	no	8 week after full bloom	9.0065
SRR3384916	fruit	no	10 week after full bloom	6.44501
SRR3384915	fruit	no	12 week after full bloom	4.75138
SRR3384914	fruit	no	14 week after full bloom	4.89262
SRR3384913	fruit	no	16 week after full bloom	1.6752
SRR3384912	fruit	no	18 week after full bloom	1.76074
SRR3384911	fruit	no	19 week after full bloom	1.20625
SRR3384910	fruit	no	20 week after full bloom	0.850016
SRR768128	whole fruit	no	25 days post anthesis	8.66635
SRR768129	whole fruit	no	35 days post anthesis	18.9589
SRR768130	whole fruit	no	60 days post anthesis	9.79978
SRR768131	whole fruit	no	87 days post anthesis	3.30991
SRR7343308	immature fruit flesh	no	immature	9.71775
SRR7343309	immature fruit flesh	no	immature	9.36362
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0629647
SRR7403506	fruit	uninfected	mature	0.066513
SRR7403507	fruit	uninfected	mature	0.0789729
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	11.7732
SRR1613974	Central seeds	no	20DAPF	13.5621
SRR1613975	Central seeds	no	20DAPF	11.9754
SRR1613976	Lateral seeds	no	20DAPF	14.4885
SRR1613977	Lateral seeds	no	20DAPF	12.9701
SRR1613978	Lateral seeds	no	20DAPF	12.2351
SRR3744786	stem	no	mature	9.32622
SRR3744787	stem	no	mature	8.7882
SRR3744772	stem	no	mature	8.86826
SRX765691	seedling shoot apex	no	4-6 week old seedling	15.3627
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	9.13088
SRR1089478	leaf	Virus-free	plantlets	26.9115
SRR1089477	leaf	ASGV-infected	plantlets	23.4949
SRR767660	leaf	uninfected	fully developed	5.63582
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	7.30074
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.42704
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.7103
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.88046
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	8.0187
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.80439
SRR6308182	young leaf	no	immature leaves	12.8006
SRR3744769	leaf	no	mature	3.36308
SRR3744770	leaf	no	mature	3.26091
SRR3744771	leaf	no	mature	3.43371
SRR5405145	leaf	no	mature	2.13442
SRR6320561	leaf	no	mature	2.56871