| Gene ID | Annotation |
|---|---|
| MD03G1112900 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0213 | E3 ubiquitin-protein ligase UBR7 [EC:2.3.2.27] UBR-box U11/U12 small nuclear ribonucleoprotein 65 kDa protein DNA topoisomerase III [EC:5.99.1.2] RNA polymerase-associated protein LEO1 serine/threonine kinase 19 [EC:2.7.11.1] protein phosphatase 4 regulatory subunit 3 chromodomain-helicase-DNA-binding protein 1-like [EC:3.6.4.12] |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD03G1112900 | mRNA | Chr03 | 9924931 | 9929894 | - |
| CDS: |
| MD03G1112900 |
| Protein: |
| MD03G1112900 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Prunus persica | Prupe.6G097200.7.p | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Prunus persica | Prupe.6G097200.4.p | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Prunus persica | Prupe.6G097200.2.p | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Prunus persica | Prupe.6G097200.1.p | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Pyrus communis | PCP013242.1 | 1 | - |
| Pyrus x bretschneideri | Pbr029023.1 | 1 | - |
| Rubus occidentalis | Ro03_G25447 | 1 | - |
| Fragaria vesca | mrna28555.1 | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Vitis vinifera | GSVIVT01020933001 | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Populus trichocarpa | Potri.013G054300.1 | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| Nicotiana benthamiana | Niben101Scf02475g09005.1 | 1 | RNA-binding protein 40 |
| Oryza sativa | LOC_Os03g21020.1 | 1 | "RNA recognition motif containing protein, putative, expressed" |
| Zea mays | GRMZM2G042615_P01 | 1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| GO term | Description | Category |
|---|---|---|
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| KO | Description | Enzyme |
|---|---|---|
| K13157 | U11/U12 small nuclear ribonucleoprotein 65 kDa protein | - |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.18 | RRM_1 | 27 | 94 | 9.00E-11 |
| PF00076.18 | RRM_1 | 373 | 445 | 1.80E-09 |
 |