Gene detail

Detail information of MD03G1117500 Annotation

Gene ID	Annotation
MD03G1117500	PDI-like 1-4

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1117500	mRNA	Chr03	10574319	10578770	-

Sequences

CDS:

MD03G1117500

GTGAAAGATGCTTTAACGCTTTAGAATCAAAACCAGCGGCAACTCCAACGGTAAAGCATTTCTCTTGACGCCTACGAAACGACGTCGTACGAGGCCTTGACTCCGCTTGTCTTCCATCCTTCCTCCACTATCTATAAACCCCTGCTAAAACCGGATCTCACTCTCACTCATTGGATCCCCGAACTCGCTCGATCACTCACTAGCTCAAAAATGGCGAGTCGACTCGTTCTCGCGTTCGCACTCAGCGCTCTCCTCTTCTTCTCCCACTCAGTTTTCTGCAAGGAATCGCACCCCATCGACGACGACGATGAGGATCTCAGCTTCCTCGAGGAGCCCACCGACCACGGCGACGACGCGCCGCACTATCCAGATCCGGATCACTACGACGAGGACAATTACGACGATCTCGAGAACTACTCCGATTTTGACGAGGGCGGCGATCATGAGGACTCGTACAAGGAGCCGGACGTGGACGAGAAGGACGTCGCCGTTTTGAAGGCGGCGAATTTCAGCGATGTGGTGGAGAAGAACAGGTTCGTCATGGTCGAGTTCTACGCGCCGTGGTGCGGACACTGCCAGGCCTTGAAACCGGAGTACGCGGCGGCAGCTACCGAGCTCAAGGGGGAAGATGTAATTTTGGCCAAGGTCGACGCGACGGAGGAGAACGAGCTGTCGCAGGAGTACGGCATCGAGGGTTTCCCGACTATCTTCTTCTTCATTGATGGCGTTCACAAGCCTTACGCAGGCCAAAGGACCAAGGAGGGGATTGTAACCTGGATTAAGAAGAAGATTGGACCTGGCATCCAAAACTTGACCACATTGGAGGATGCGGAACGCATATTGACTGCTGAAAGCAAAGTCGTTTTGGGCTACCTCAACTCTTTGGTGGGTCCTGAGAGTGACGAGCTTGCCGCTGCTTCAAGACTTGAAGATGAGGTGTCCTTTTACCAAACTGTAGATCCTAAGGTGGCAAAACTTTTCCATCTTGATGCTGAAGTTAAGCGCCCTGTTTTGGTCCTGCTAAAGAAGGAGGCTGAGAAACTAAGCTATTTCGATGGTAAATTTGATAAGACTGCAATTGCGGAGTTTGTCTTTGCGAACAAGCTACCTCTGGTTATCACCTTTACCAGGGATAATGCCCCACAAATTTTTGAAAGTACCATCAAGAAACAGCTGTTGCTCTTTGCCTCTTCAAAAGATTCAGAGAAGGTTCTCCCTGATTTTCAAAAGGCTGCACAACTTTTCAAAGGAAAGCTTATCTTTGTATATGTGGAAACGGATAATGAAGATATCGGAAAGCCAGTTTCGGATTATTTCGGTGTCACTAGTGAAGCTCCAACAGTTCTTGGGTACACTGGAAATGACGATGGTAGGAAATTTTTTCTTGACGGAGAGGTGACCATATCTAATTTAAAGGCTTTTGGGAAGGACTTTATTGAGGACAAGCTTAAACCTTTCTATAAGTCGGACCCAATTCCTGAAAGTAACGACGGGGATGTGAAAATAGTTGTTGGGAATAACTTTGATGAAATTGTCTTGGACGAGTCAAAGGATGTTCTTCTCGAGATATATGCACCCTGGTGCGGGCATTGCCAATCTCTGGAGCCAACCTACAACAAGCTTGCCAAACATCTACGAGGCATTGACTCTATTGTTATAGCCAAGATGGACGGAACCACAAATGAGCATCCCAGGGCAAAGGCTGATGGGTTCCCTACACTTCTATTCTTTCCAGCGGGAAATAAGAGCTTTGATCCAATTTCCGTAGACAGCGACCGCACAGTGGTGGCATTCTACAAATTCCTCAAGAAAAACGCATCAATCCCTTTCAAGCTCCAAAAGCCAGCCTCAACACCAAAATCCGAGGGTTCTGCCGCTACAGAGAGCAAAGGGAGCGGCGGCGCCGAAGACTCGAAGGATGAATTGTGAGGAATATAGTAGTGTGCGCTAAATTGCTAGTTTGTCTGCCTAGTTAGTATTTGCCATCACCATCCGTGTGGTAGAGAAAGAGACTTGTCACATAGAAGAGAAAATAGGGAGATCAGAAATGATATGAGAAACTCAAATTCGCAATATAAACCCCGAAAAGATGTCCGGAAAATTTTAAGAAACTTAACCTGAATAATCTCTCTTTGCTGTGATGAATGTGTTATTTCAGTTTAGTTTGTTACAAAAGCATCAATTTAATC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP003794.1	1	-
Pyrus x bretschneideri	Pbr008420.1	1	-
Rosa multiflora	Rmu_sc0000375.1_g000007.1	1	-
Rubus occidentalis	Ro03_G07470	1	-
Fragaria vesca	mrna04977.1	1	PDI-like 1-4
Vitis vinifera	GSVIVT01025184001	1	PDI-like 1-4
Solanum lycopersicum	Solyc04g049450.2.1	1	PDI-like 1-3
Populus trichocarpa	Potri.009G013600.1	1	PDI-like 1-4
Nicotiana benthamiana	Niben101Scf09264g00014.1	1	Protein disulfide isomerase-like 1-1
Oryza sativa	LOC_Os02g01010.1	1	"OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed"
Zea mays	GRMZM2G134889_P01	1	-
Zea mays	GRMZM2G033829_P01	0.656	-

Gene Ontology

GO term	Description	Category
GO:0005783	endoplasmic reticulum	cellular component
GO:0006662	glycerol ether metabolic process	biological_process
GO:0045454	cell redox homeostasis	biological_process
GO:0009055	electron carrier activity	molecular_function
GO:0016853	isomerase activity	molecular_function
GO:0015035	protein disulfide oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
K09580	protein disulfide-isomerase A1	EC:5.3.4.1

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00085.16	Thioredoxin	92	192	9.00E-30
PF13848.2	Thioredoxin_6	234	406	3.20E-28
PF00085.16	Thioredoxin	430	514	5.20E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	25.7052
SRR5252888	dormant buds	no	dormant buds(0 month)	39.7878
SRR5252889	dormant buds	no	dormant buds(0 month)	43.3654
SRR5252886	dormant buds	no	dormant buds(1 months)	51.8238
SRR5252887	dormant buds	no	dormant buds(1 months)	45.4952
SRR5252884	dormant buds	no	dormant buds(2 months)	37.8584
SRR5252882	dormant buds	no	dormant buds(3 months)	41.363
SRR5252883	dormant buds	no	dormant buds(3 months)	32.3515
SRR5252880	dormant buds	no	dormant buds(4 months)	42.0062
SRR5252881	dormant buds	no	dormant buds(4 months)	46.1329
SRR5252878	bud break	no	bud break	36.8605
SRR5252879	bud break	no	bud break	70.8398
SRR3744766	flower	no	mature	18.3506
SRR3744767	flower	no	mature	17.3902
SRR3744768	flower	no	mature	17.8105
SRR6308190	stigmas	no	open flowers	87.9268
SRR6308181	styles	no	open flowers	44.4419
SRR6308188	filaments	no	open flowers	49.0939
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	15.558
SRR6308192	pollen	no	open flowers	5.85708
SRR6308191	petals	no	open flowers	31.5347
SRR6308194	sepals	no	open flowers	27.1104
SRR6308193	receptacles	no	open flowers	55.4586
SRR6308189	ovaries	no	open flowers	53.6267
SRR3384922	fruit	no	1 week after full bloom	65.3798
SRR3384921	fruit	no	2 week after full bloom	61.8875
SRR3384920	fruit	no	3 week after full bloom	34.815
SRR3384919	fruit	no	4 week after full bloom	40.9541
SRR3384923	fruit	no	5 week after full bloom	28.3078
SRR3384918	fruit	no	6 week after full bloom	35.5308
SRR3384917	fruit	no	8 week after full bloom	24.0711
SRR3384916	fruit	no	10 week after full bloom	28.9564
SRR3384915	fruit	no	12 week after full bloom	40.9097
SRR3384914	fruit	no	14 week after full bloom	31.1799
SRR3384913	fruit	no	16 week after full bloom	30.6486
SRR3384912	fruit	no	18 week after full bloom	33.3322
SRR3384911	fruit	no	19 week after full bloom	25.9777
SRR3384910	fruit	no	20 week after full bloom	44.8043
SRR768128	whole fruit	no	25 days post anthesis	61.6551
SRR768129	whole fruit	no	35 days post anthesis	96.7306
SRR768130	whole fruit	no	60 days post anthesis	39.9362
SRR768131	whole fruit	no	87 days post anthesis	42.6907
SRR7343308	immature fruit flesh	no	immature	37.289
SRR7343309	immature fruit flesh	no	immature	41.8744
SRR6320494	ripe fruit flesh	no	mature	22.4956
SRR5405143	ripe fruit peel	no	mature	32.6022
SRR6320572	ripe fruit peel	no	mature	68.0472
SRR7403504	fruit	uninfected	mature	23.3258
SRR7403506	fruit	uninfected	mature	23.0642
SRR7403507	fruit	uninfected	mature	24.3538
SRR7403500	fruit	infected with penicillium expansum	mature	41.6033
SRR7403501	fruit	infected with penicillium expansum	mature	45.2157
SRR7403508	fruit	infected with penicillium expansum	mature	43.9838
SRR7403502	fruit	infected with penicillium expansum	mature	39.7109
SRR7403503	fruit	infected with penicillium expansum	mature	37.9818
SRR7403505	fruit	infected with penicillium expansum	mature	40.5454
SRR1613973	Central seeds	no	20DAPF	245.254
SRR1613974	Central seeds	no	20DAPF	224.472
SRR1613975	Central seeds	no	20DAPF	228.981
SRR1613976	Lateral seeds	no	20DAPF	202.703
SRR1613977	Lateral seeds	no	20DAPF	208.935
SRR1613978	Lateral seeds	no	20DAPF	200.463
SRR3744786	stem	no	mature	42.8062
SRR3744787	stem	no	mature	45.448
SRR3744772	stem	no	mature	42.5498
SRX765691	seedling shoot apex	no	4-6 week old seedling	39.9841
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	46.8452
SRR1089478	leaf	Virus-free	plantlets	29.8642
SRR1089477	leaf	ASGV-infected	plantlets	25.7079
SRR767660	leaf	uninfected	fully developed	18.6245
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	34.1036
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	23.1494
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	19.0928
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	14.8356
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	27.6394
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	40.9
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	27.7019
SRR6308182	young leaf	no	immature leaves	46.5385
SRR3744769	leaf	no	mature	21.1359
SRR3744770	leaf	no	mature	19.8016
SRR3744771	leaf	no	mature	20.4901
SRR5405145	leaf	no	mature	36.1345
SRR6320561	leaf	no	mature	48