Gene detail

Detail information of MD03G1119100 Annotation

Gene ID	Annotation
MD03G1119100	Uncharacterised protein family (UPF0497)

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0668	NFF CAF-1 complex myosin complex ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] histone binding double-stranded RNA binding motor activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1119100	mRNA	Chr03	10896334	10898580	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G28370.1	1	Uncharacterised protein family (UPF0497)
Pyrus communis	PCP003785.1	1	-
Pyrus x bretschneideri	Pbr008408.1	1	-
Rosa multiflora	Rmu_sc0008874.1_g000008.1	1	-
Rubus occidentalis	Ro03_G07448	1	-
Fragaria vesca	mrna16832.1	1	Uncharacterised protein family (UPF0497)
Vitis vinifera	GSVIVT01025194001	1	Uncharacterised protein family (UPF0497)
Solanum lycopersicum	Solyc11g069480.1.1	1	Uncharacterised protein family (UPF0497)
Populus trichocarpa	Potri.009G014600.1	1	Uncharacterised protein family (UPF0497)
Populus trichocarpa	Potri.004G211400.1	0.693	Uncharacterised protein family (UPF0497)
Nicotiana benthamiana	Niben101Scf01759g05008.1	1	CASP-like protein 5A1
Nicotiana benthamiana	Niben101Scf07851g02011.1	0.915	CASP-like protein 5A1
Oryza sativa	LOC_Os03g10870.1	1	"membrane associated DUF588 domain containing protein, putative, expressed"
Zea mays	GRMZM2G136901_P01	1	CASP-like protein 5A3

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04535.8	DUF588	38	164	1.10E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	20.0217
SRR5252888	dormant buds	no	dormant buds(0 month)	5.85324
SRR5252889	dormant buds	no	dormant buds(0 month)	8.23366
SRR5252886	dormant buds	no	dormant buds(1 months)	5.13395
SRR5252887	dormant buds	no	dormant buds(1 months)	5.36231
SRR5252884	dormant buds	no	dormant buds(2 months)	2.85454
SRR5252882	dormant buds	no	dormant buds(3 months)	3.46567
SRR5252883	dormant buds	no	dormant buds(3 months)	6.814
SRR5252880	dormant buds	no	dormant buds(4 months)	3.75953
SRR5252881	dormant buds	no	dormant buds(4 months)	4.59021
SRR5252878	bud break	no	bud break	9.13682
SRR5252879	bud break	no	bud break	5.81329
SRR3744766	flower	no	mature	20.8608
SRR3744767	flower	no	mature	20.1755
SRR3744768	flower	no	mature	21.8725
SRR6308190	stigmas	no	open flowers	22.4757
SRR6308181	styles	no	open flowers	16.2441
SRR6308188	filaments	no	open flowers	17.8308
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	15.3548
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	14.5635
SRR6308194	sepals	no	open flowers	10.6825
SRR6308193	receptacles	no	open flowers	12.8792
SRR6308189	ovaries	no	open flowers	14.1696
SRR3384922	fruit	no	1 week after full bloom	12.8378
SRR3384921	fruit	no	2 week after full bloom	15.4996
SRR3384920	fruit	no	3 week after full bloom	23.5304
SRR3384919	fruit	no	4 week after full bloom	22.9808
SRR3384923	fruit	no	5 week after full bloom	18.6059
SRR3384918	fruit	no	6 week after full bloom	23.9342
SRR3384917	fruit	no	8 week after full bloom	26.2009
SRR3384916	fruit	no	10 week after full bloom	25.5278
SRR3384915	fruit	no	12 week after full bloom	27.4319
SRR3384914	fruit	no	14 week after full bloom	20.449
SRR3384913	fruit	no	16 week after full bloom	25.2523
SRR3384912	fruit	no	18 week after full bloom	21.0388
SRR3384911	fruit	no	19 week after full bloom	28.9553
SRR3384910	fruit	no	20 week after full bloom	24.3157
SRR768128	whole fruit	no	25 days post anthesis	14.7509
SRR768129	whole fruit	no	35 days post anthesis	29.139
SRR768130	whole fruit	no	60 days post anthesis	27.3147
SRR768131	whole fruit	no	87 days post anthesis	22.5573
SRR7343308	immature fruit flesh	no	immature	19.1801
SRR7343309	immature fruit flesh	no	immature	20.3961
SRR6320494	ripe fruit flesh	no	mature	14.7047
SRR5405143	ripe fruit peel	no	mature	41.0468
SRR6320572	ripe fruit peel	no	mature	28.1436
SRR7403504	fruit	uninfected	mature	32.4729
SRR7403506	fruit	uninfected	mature	31.3686
SRR7403507	fruit	uninfected	mature	30.2277
SRR7403500	fruit	infected with penicillium expansum	mature	52.4803
SRR7403501	fruit	infected with penicillium expansum	mature	53.4202
SRR7403508	fruit	infected with penicillium expansum	mature	58.7389
SRR7403502	fruit	infected with penicillium expansum	mature	48.4246
SRR7403503	fruit	infected with penicillium expansum	mature	48.3882
SRR7403505	fruit	infected with penicillium expansum	mature	52.3957
SRR1613973	Central seeds	no	20DAPF	18.0163
SRR1613974	Central seeds	no	20DAPF	15.3494
SRR1613975	Central seeds	no	20DAPF	17.9405
SRR1613976	Lateral seeds	no	20DAPF	12.4537
SRR1613977	Lateral seeds	no	20DAPF	16.9371
SRR1613978	Lateral seeds	no	20DAPF	15.5905
SRR3744786	stem	no	mature	31.8538
SRR3744787	stem	no	mature	32.2704
SRR3744772	stem	no	mature	30.6695
SRX765691	seedling shoot apex	no	4-6 week old seedling	19.6667
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	25.6765
SRR1089478	leaf	Virus-free	plantlets	43.9548
SRR1089477	leaf	ASGV-infected	plantlets	33.6756
SRR767660	leaf	uninfected	fully developed	34.5578
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	24.5092
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	23.7283
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	77.956
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	6.85337
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	24.4003
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	30.41
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	25.3564
SRR6308182	young leaf	no	immature leaves	17.1155
SRR3744769	leaf	no	mature	24.944
SRR3744770	leaf	no	mature	21.5748
SRR3744771	leaf	no	mature	22.6226
SRR5405145	leaf	no	mature	22.6675
SRR6320561	leaf	no	mature	12.0263