Gene detail

Detail information of MD03G1128000 Annotation

Gene ID	Annotation
MD03G1128000	CDK-subunit 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1128000	mRNA	Chr03	12452946	12454337	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G27960.1	1	CKS1;CKS1AT\|cyclin-dependent kinase-subunit 1;
Prunus persica	Prupe.6G113800.2.p	1	CDK-subunit 2
Prunus persica	Prupe.6G113800.1.p	1	CDK-subunit 2
Pyrus communis	PCP000637.1	1	-
Pyrus communis	PCP015761.1	1	-
Pyrus x bretschneideri	Pbr030375.1	1	-
Rosa multiflora	Rmu_sc0002761.1_g000014.1	1	-
Rosa multiflora	Rmu_sc0000850.1_g000012.1	1	-
Rubus occidentalis	Ro06_G13134	1	-
Vitis vinifera	GSVIVT01031454001	1	CDK-subunit 2
Populus trichocarpa	Potri.009G004000.1	1	CDK-subunit 2
Nicotiana benthamiana	Niben101Scf01464g01005.1	1	Cyclin-dependent kinases regulatory subunit 1
Nicotiana benthamiana	Niben101Scf03289g01005.1	0.909	Cyclin-dependent kinases regulatory subunit 1
Oryza sativa	LOC_Os03g05300.1	1	"cyclin-dependent kinases regulatory subunit 1, putative, expressed"
Zea mays	GRMZM2G038485_P01	1	Cyclin-dependent kinases regulatory subunit

Gene Ontology

GO term	Description	Category
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	molecular_function
GO:0007049	cell cycle	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01111.15	CKS	4	70	8.00E-36

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	151.882
SRR5252888	dormant buds	no	dormant buds(0 month)	54.5023
SRR5252889	dormant buds	no	dormant buds(0 month)	57.8291
SRR5252886	dormant buds	no	dormant buds(1 months)	42.8297
SRR5252887	dormant buds	no	dormant buds(1 months)	41.5421
SRR5252884	dormant buds	no	dormant buds(2 months)	34.23
SRR5252882	dormant buds	no	dormant buds(3 months)	40.7015
SRR5252883	dormant buds	no	dormant buds(3 months)	53.9928
SRR5252880	dormant buds	no	dormant buds(4 months)	43.093
SRR5252881	dormant buds	no	dormant buds(4 months)	39.5981
SRR5252878	bud break	no	bud break	79.1592
SRR5252879	bud break	no	bud break	35.1116
SRR3744766	flower	no	mature	109.062
SRR3744767	flower	no	mature	115.171
SRR3744768	flower	no	mature	118.556
SRR6308190	stigmas	no	open flowers	64.4306
SRR6308181	styles	no	open flowers	70.1084
SRR6308188	filaments	no	open flowers	75.1705
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	47.6989
SRR6308192	pollen	no	open flowers	146.939
SRR6308191	petals	no	open flowers	58.993
SRR6308194	sepals	no	open flowers	54.6146
SRR6308193	receptacles	no	open flowers	74.624
SRR6308189	ovaries	no	open flowers	67.4089
SRR3384922	fruit	no	1 week after full bloom	140.053
SRR3384921	fruit	no	2 week after full bloom	169.001
SRR3384920	fruit	no	3 week after full bloom	251.173
SRR3384919	fruit	no	4 week after full bloom	234.82
SRR3384923	fruit	no	5 week after full bloom	215.678
SRR3384918	fruit	no	6 week after full bloom	257.089
SRR3384917	fruit	no	8 week after full bloom	306.037
SRR3384916	fruit	no	10 week after full bloom	280.21
SRR3384915	fruit	no	12 week after full bloom	307.542
SRR3384914	fruit	no	14 week after full bloom	273.499
SRR3384913	fruit	no	16 week after full bloom	268.283
SRR3384912	fruit	no	18 week after full bloom	233.209
SRR3384911	fruit	no	19 week after full bloom	215.743
SRR3384910	fruit	no	20 week after full bloom	166.022
SRR768128	whole fruit	no	25 days post anthesis	156.535
SRR768129	whole fruit	no	35 days post anthesis	118.723
SRR768130	whole fruit	no	60 days post anthesis	149.925
SRR768131	whole fruit	no	87 days post anthesis	100.798
SRR7343308	immature fruit flesh	no	immature	129.721
SRR7343309	immature fruit flesh	no	immature	153.385
SRR6320494	ripe fruit flesh	no	mature	199.41
SRR5405143	ripe fruit peel	no	mature	144.468
SRR6320572	ripe fruit peel	no	mature	67.5872
SRR7403504	fruit	uninfected	mature	172.499
SRR7403506	fruit	uninfected	mature	163.003
SRR7403507	fruit	uninfected	mature	168.773
SRR7403500	fruit	infected with penicillium expansum	mature	50.5607
SRR7403501	fruit	infected with penicillium expansum	mature	55.7473
SRR7403508	fruit	infected with penicillium expansum	mature	51.0562
SRR7403502	fruit	infected with penicillium expansum	mature	51.5896
SRR7403503	fruit	infected with penicillium expansum	mature	50.4188
SRR7403505	fruit	infected with penicillium expansum	mature	46.4976
SRR1613973	Central seeds	no	20DAPF	90.8572
SRR1613974	Central seeds	no	20DAPF	82.1911
SRR1613975	Central seeds	no	20DAPF	89.9237
SRR1613976	Lateral seeds	no	20DAPF	92.3667
SRR1613977	Lateral seeds	no	20DAPF	102.108
SRR1613978	Lateral seeds	no	20DAPF	90.422
SRR3744786	stem	no	mature	138.12
SRR3744787	stem	no	mature	140.086
SRR3744772	stem	no	mature	134.338
SRX765691	seedling shoot apex	no	4-6 week old seedling	92.1089
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	97.7313
SRR1089478	leaf	Virus-free	plantlets	47.9749
SRR1089477	leaf	ASGV-infected	plantlets	45.9698
SRR767660	leaf	uninfected	fully developed	138.036
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	163.466
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	103.795
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	340.491
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	66.6127
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	120.038
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	109.485
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	74.9069
SRR6308182	young leaf	no	immature leaves	78.8195
SRR3744769	leaf	no	mature	177.702
SRR3744770	leaf	no	mature	176.697
SRR3744771	leaf	no	mature	170.916
SRR5405145	leaf	no	mature	54.6639
SRR6320561	leaf	no	mature	56.3761