Gene detail

Detail information of MD03G1163300 Annotation

Gene ID	Annotation
MD03G1163300	Tryptophan/tyrosine permease

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0810	sorting nexin-1/2 YggT family protein chloroplast inner membrane amine transmembrane transporter activity retromer complex multivesicular body

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1163300	mRNA	Chr03	20314545	20318994	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	HAAAP

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G19500.1	1	Tryptophan/tyrosine permease
Prunus persica	Prupe.4G269300.1.p	1	Tryptophan/tyrosine permease
Pyrus x bretschneideri	Pbr038553.1	1	-
Rosa multiflora	Rmu_sc0002289.1_g000011.1	1	-
Rubus occidentalis	Ro03_G32302	1	-
Solanum lycopersicum	Solyc11g072170.1.1	1	Tryptophan/tyrosine permease
Populus trichocarpa	Potri.001G224900.4	1	Tryptophan/tyrosine permease
Nicotiana benthamiana	Niben101Scf04742g03019.1	1	amino acid transporter [Chlamydia trachomatis] ref\|YP_005808208.1\| tyr [Chlamydia trachomatis G/9301]
Oryza sativa	LOC_Os07g46780.2	1	"tyrosine-specific transport protein, putative, expressed"
Zea mays	GRMZM2G136794_P01	1	Tryptophan/tyrosine permease

Gene Ontology

GO term	Description	Category
GO:0003333	amino acid transmembrane transport	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.89948
SRR5252888	dormant buds	no	dormant buds(0 month)	0.321753
SRR5252889	dormant buds	no	dormant buds(0 month)	1.05608
SRR5252886	dormant buds	no	dormant buds(1 months)	1.08993
SRR5252887	dormant buds	no	dormant buds(1 months)	1.15838
SRR5252884	dormant buds	no	dormant buds(2 months)	1.15621
SRR5252882	dormant buds	no	dormant buds(3 months)	0.927692
SRR5252883	dormant buds	no	dormant buds(3 months)	0.821339
SRR5252880	dormant buds	no	dormant buds(4 months)	1.38877
SRR5252881	dormant buds	no	dormant buds(4 months)	1.02765
SRR5252878	bud break	no	bud break	1.15271
SRR5252879	bud break	no	bud break	1.40605
SRR3744766	flower	no	mature	1.38387
SRR3744767	flower	no	mature	0.871215
SRR3744768	flower	no	mature	0.876047
SRR6308190	stigmas	no	open flowers	3.40465
SRR6308181	styles	no	open flowers	1.74076
SRR6308188	filaments	no	open flowers	1.66405
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.612956
SRR6308192	pollen	no	open flowers	0.697619
SRR6308191	petals	no	open flowers	0.812538
SRR6308194	sepals	no	open flowers	3.54373
SRR6308193	receptacles	no	open flowers	1.72707
SRR6308189	ovaries	no	open flowers	2.36039
SRR3384922	fruit	no	1 week after full bloom	2.60549
SRR3384921	fruit	no	2 week after full bloom	2.17397
SRR3384920	fruit	no	3 week after full bloom	3.25934
SRR3384919	fruit	no	4 week after full bloom	2.72437
SRR3384923	fruit	no	5 week after full bloom	2.36359
SRR3384918	fruit	no	6 week after full bloom	1.82157
SRR3384917	fruit	no	8 week after full bloom	2.11852
SRR3384916	fruit	no	10 week after full bloom	1.94547
SRR3384915	fruit	no	12 week after full bloom	2.47029
SRR3384914	fruit	no	14 week after full bloom	1.68797
SRR3384913	fruit	no	16 week after full bloom	0.833738
SRR3384912	fruit	no	18 week after full bloom	0.842606
SRR3384911	fruit	no	19 week after full bloom	1.03906
SRR3384910	fruit	no	20 week after full bloom	0.768358
SRR768128	whole fruit	no	25 days post anthesis	2.74365
SRR768129	whole fruit	no	35 days post anthesis	1.36299
SRR768130	whole fruit	no	60 days post anthesis	0.721639
SRR768131	whole fruit	no	87 days post anthesis	0.362122
SRR7343308	immature fruit flesh	no	immature	0.962089
SRR7343309	immature fruit flesh	no	immature	1.28011
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.3581
SRR6320572	ripe fruit peel	no	mature	0.265844
SRR7403504	fruit	uninfected	mature	0.301363
SRR7403506	fruit	uninfected	mature	0.509353
SRR7403507	fruit	uninfected	mature	0.453578
SRR7403500	fruit	infected with penicillium expansum	mature	0.623109
SRR7403501	fruit	infected with penicillium expansum	mature	0.46234
SRR7403508	fruit	infected with penicillium expansum	mature	0.416622
SRR7403502	fruit	infected with penicillium expansum	mature	0.579797
SRR7403503	fruit	infected with penicillium expansum	mature	0.863448
SRR7403505	fruit	infected with penicillium expansum	mature	0.452746
SRR1613973	Central seeds	no	20DAPF	0.777382
SRR1613974	Central seeds	no	20DAPF	1.22393
SRR1613975	Central seeds	no	20DAPF	0.966796
SRR1613976	Lateral seeds	no	20DAPF	0.6197
SRR1613977	Lateral seeds	no	20DAPF	0.875806
SRR1613978	Lateral seeds	no	20DAPF	0.846813
SRR3744786	stem	no	mature	0.799335
SRR3744787	stem	no	mature	0.790841
SRR3744772	stem	no	mature	0.887363
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.75697
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.49259
SRR1089478	leaf	Virus-free	plantlets	1.04316
SRR1089477	leaf	ASGV-infected	plantlets	2.50842
SRR767660	leaf	uninfected	fully developed	5.07879
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.49675
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	8.20115
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	17.2208
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.20231
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.960083
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.15857
SRR6308182	young leaf	no	immature leaves	3.88981
SRR3744769	leaf	no	mature	4.03309
SRR3744770	leaf	no	mature	4.99862
SRR3744771	leaf	no	mature	3.94388
SRR5405145	leaf	no	mature	7.42963
SRR6320561	leaf	no	mature	9.977