Gene detail

Detail information of MD03G1236500 Annotation

Gene ID	Annotation
MD03G1236500	Protein of unknown function

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1236500	mRNA	Chr03	32195762	32197915	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Rosa multiflora	Rmu_sc0005375.1_g000025.1	1	-
Rubus occidentalis	Ro03_G10061	1	-
Oryza sativa	LOC_Os06g06270.1	1	"transcription elongation factor 1, putative"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05129.9	Elf1	32	106	2.60E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	73.7427
SRR5252888	dormant buds	no	dormant buds(0 month)	69.1722
SRR5252889	dormant buds	no	dormant buds(0 month)	66.9923
SRR5252886	dormant buds	no	dormant buds(1 months)	63.3038
SRR5252887	dormant buds	no	dormant buds(1 months)	62.2587
SRR5252884	dormant buds	no	dormant buds(2 months)	59.7365
SRR5252882	dormant buds	no	dormant buds(3 months)	71.5733
SRR5252883	dormant buds	no	dormant buds(3 months)	86.9734
SRR5252880	dormant buds	no	dormant buds(4 months)	72.2332
SRR5252881	dormant buds	no	dormant buds(4 months)	76.6125
SRR5252878	bud break	no	bud break	53.9598
SRR5252879	bud break	no	bud break	39.2256
SRR3744766	flower	no	mature	70.3982
SRR3744767	flower	no	mature	66.2919
SRR3744768	flower	no	mature	65.4288
SRR6308190	stigmas	no	open flowers	50.6852
SRR6308181	styles	no	open flowers	51.0895
SRR6308188	filaments	no	open flowers	52.34
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	80.8084
SRR6308192	pollen	no	open flowers	568.112
SRR6308191	petals	no	open flowers	38.2869
SRR6308194	sepals	no	open flowers	42.6768
SRR6308193	receptacles	no	open flowers	66.9841
SRR6308189	ovaries	no	open flowers	67.3251
SRR3384922	fruit	no	1 week after full bloom	109.601
SRR3384921	fruit	no	2 week after full bloom	123.936
SRR3384920	fruit	no	3 week after full bloom	106.794
SRR3384919	fruit	no	4 week after full bloom	102.974
SRR3384923	fruit	no	5 week after full bloom	114.169
SRR3384918	fruit	no	6 week after full bloom	124.461
SRR3384917	fruit	no	8 week after full bloom	145.221
SRR3384916	fruit	no	10 week after full bloom	93.8334
SRR3384915	fruit	no	12 week after full bloom	117.061
SRR3384914	fruit	no	14 week after full bloom	98.042
SRR3384913	fruit	no	16 week after full bloom	91.6697
SRR3384912	fruit	no	18 week after full bloom	74.1254
SRR3384911	fruit	no	19 week after full bloom	86.5156
SRR3384910	fruit	no	20 week after full bloom	67.2689
SRR768128	whole fruit	no	25 days post anthesis	97.5057
SRR768129	whole fruit	no	35 days post anthesis	59.5686
SRR768130	whole fruit	no	60 days post anthesis	56.5393
SRR768131	whole fruit	no	87 days post anthesis	50.3236
SRR7343308	immature fruit flesh	no	immature	68.1592
SRR7343309	immature fruit flesh	no	immature	82.7702
SRR6320494	ripe fruit flesh	no	mature	55.1288
SRR5405143	ripe fruit peel	no	mature	51.3072
SRR6320572	ripe fruit peel	no	mature	41.1279
SRR7403504	fruit	uninfected	mature	51.0339
SRR7403506	fruit	uninfected	mature	41.8568
SRR7403507	fruit	uninfected	mature	47.7464
SRR7403500	fruit	infected with penicillium expansum	mature	24.6641
SRR7403501	fruit	infected with penicillium expansum	mature	30.2356
SRR7403508	fruit	infected with penicillium expansum	mature	28.6798
SRR7403502	fruit	infected with penicillium expansum	mature	15.2998
SRR7403503	fruit	infected with penicillium expansum	mature	16.3457
SRR7403505	fruit	infected with penicillium expansum	mature	16.919
SRR1613973	Central seeds	no	20DAPF	91.1644
SRR1613974	Central seeds	no	20DAPF	78.508
SRR1613975	Central seeds	no	20DAPF	95.4241
SRR1613976	Lateral seeds	no	20DAPF	83.1127
SRR1613977	Lateral seeds	no	20DAPF	114.242
SRR1613978	Lateral seeds	no	20DAPF	92.2777
SRR3744786	stem	no	mature	105.51
SRR3744787	stem	no	mature	109.698
SRR3744772	stem	no	mature	101.704
SRX765691	seedling shoot apex	no	4-6 week old seedling	37.08
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	46.8314
SRR1089478	leaf	Virus-free	plantlets	20.2435
SRR1089477	leaf	ASGV-infected	plantlets	18.1821
SRR767660	leaf	uninfected	fully developed	33.4102
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	26.3025
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	35.0468
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	97.5447
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	48.665
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	55.3483
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	45.2639
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	60.0589
SRR6308182	young leaf	no	immature leaves	46.591
SRR3744769	leaf	no	mature	91.4016
SRR3744770	leaf	no	mature	72.2994
SRR3744771	leaf	no	mature	72.1927
SRR5405145	leaf	no	mature	39.6477
SRR6320561	leaf	no	mature	31.6169