Gene detail

Detail information of MD03G1259600 Annotation

Gene ID	Annotation
MD03G1259600	NIMA-related kinase 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1259600	mRNA	Chr03	34640685	34643373	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:4.1.6

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Rosa multiflora	Rmu_sc0009929.1_g000005.1	1	-
Nicotiana benthamiana	Niben101Scf10968g03005.1	1	Serine/threonine-protein kinase 36

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	4	214	3.20E-56

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.14987
SRR5252888	dormant buds	no	dormant buds(0 month)	3.29021
SRR5252889	dormant buds	no	dormant buds(0 month)	3.90228
SRR5252886	dormant buds	no	dormant buds(1 months)	3.78151
SRR5252887	dormant buds	no	dormant buds(1 months)	1.90374
SRR5252884	dormant buds	no	dormant buds(2 months)	4.22259
SRR5252882	dormant buds	no	dormant buds(3 months)	3.89623
SRR5252883	dormant buds	no	dormant buds(3 months)	5.07627
SRR5252880	dormant buds	no	dormant buds(4 months)	5.24098
SRR5252881	dormant buds	no	dormant buds(4 months)	5.2543
SRR5252878	bud break	no	bud break	6.23052
SRR5252879	bud break	no	bud break	5.04168
SRR3744766	flower	no	mature	2.14928
SRR3744767	flower	no	mature	2.76484
SRR3744768	flower	no	mature	2.95359
SRR6308190	stigmas	no	open flowers	2.39945
SRR6308181	styles	no	open flowers	2.74717
SRR6308188	filaments	no	open flowers	0.344737
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.8378
SRR6308192	pollen	no	open flowers	6.07535
SRR6308191	petals	no	open flowers	1.76446
SRR6308194	sepals	no	open flowers	1.28277
SRR6308193	receptacles	no	open flowers	2.95496
SRR6308189	ovaries	no	open flowers	2.21539
SRR3384922	fruit	no	1 week after full bloom	0.317214
SRR3384921	fruit	no	2 week after full bloom	1.28762
SRR3384920	fruit	no	3 week after full bloom	1.20936
SRR3384919	fruit	no	4 week after full bloom	0.139658
SRR3384923	fruit	no	5 week after full bloom	0.132814
SRR3384918	fruit	no	6 week after full bloom	0.665321
SRR3384917	fruit	no	8 week after full bloom	0.640368
SRR3384916	fruit	no	10 week after full bloom	0.277297
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0.0795513
SRR3384913	fruit	no	16 week after full bloom	0.187396
SRR3384912	fruit	no	18 week after full bloom	0.0879309
SRR3384911	fruit	no	19 week after full bloom	0.084336
SRR3384910	fruit	no	20 week after full bloom	0.396197
SRR768128	whole fruit	no	25 days post anthesis	8.38129
SRR768129	whole fruit	no	35 days post anthesis	1.9872
SRR768130	whole fruit	no	60 days post anthesis	1.40284
SRR768131	whole fruit	no	87 days post anthesis	1.71588
SRR7343308	immature fruit flesh	no	immature	0.937817
SRR7343309	immature fruit flesh	no	immature	0.936407
SRR6320494	ripe fruit flesh	no	mature	1.78459
SRR5405143	ripe fruit peel	no	mature	0.525073
SRR6320572	ripe fruit peel	no	mature	0.384519
SRR7403504	fruit	uninfected	mature	1.75853
SRR7403506	fruit	uninfected	mature	1.53255
SRR7403507	fruit	uninfected	mature	1.15795
SRR7403500	fruit	infected with penicillium expansum	mature	2.84063
SRR7403501	fruit	infected with penicillium expansum	mature	2.19203
SRR7403508	fruit	infected with penicillium expansum	mature	4.61909
SRR7403502	fruit	infected with penicillium expansum	mature	2.81939
SRR7403503	fruit	infected with penicillium expansum	mature	2.30929
SRR7403505	fruit	infected with penicillium expansum	mature	2.35884
SRR1613973	Central seeds	no	20DAPF	4.38562
SRR1613974	Central seeds	no	20DAPF	4.26035
SRR1613975	Central seeds	no	20DAPF	2.92503
SRR1613976	Lateral seeds	no	20DAPF	3.74763
SRR1613977	Lateral seeds	no	20DAPF	3.43597
SRR1613978	Lateral seeds	no	20DAPF	3.96568
SRR3744786	stem	no	mature	3.28049
SRR3744787	stem	no	mature	3.61232
SRR3744772	stem	no	mature	3.63915
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.36017
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.89051
SRR1089478	leaf	Virus-free	plantlets	1.67051
SRR1089477	leaf	ASGV-infected	plantlets	2.82719
SRR767660	leaf	uninfected	fully developed	2.30936
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.10577
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	13.4499
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.998891
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.927752
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.589008
SRR6308182	young leaf	no	immature leaves	5.15269
SRR3744769	leaf	no	mature	3.12081
SRR3744770	leaf	no	mature	4.4505
SRR3744771	leaf	no	mature	4.46814
SRR5405145	leaf	no	mature	1.62585
SRR6320561	leaf	no	mature	2.7774