Gene detail

Detail information of MD03G1267900 Annotation

Gene ID	Annotation
MD03G1267900	isopentenyltransferase 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1267900	mRNA	Chr03	35283239	35284619	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G63110.1	1	ATIPT3;IPT3\|isopentenyltransferase 3
Prunus persica	Prupe.8G243600.1.p	1	isopentenyltransferase 3
Rosa multiflora	Rmu_sc0003735.1_g000032.1	1	-
Rubus occidentalis	Ro02_G09687	1	-
Fragaria vesca	mrna27842.1	1	isopentenyltransferase 3
Vitis vinifera	GSVIVT01017885001	1	isopentenyltransferase 5
Vitis vinifera	GSVIVT01034295001	1	isopentenyltransferase 3
Solanum lycopersicum	Solyc01g080150.2.1	1	isopentenyltransferase 5
Populus trichocarpa	Potri.014G139300.1	1	isopentenyltransferase 3
Nicotiana benthamiana	Niben101Scf04283g02008.1	1	tRNA dimethylallyltransferase
Nicotiana benthamiana	Niben101Scf01782g00011.1	0.828	tRNA dimethylallyltransferase
Oryza sativa	LOC_Os03g59570.1	1	"IPP transferase, putative, expressed"
Oryza sativa	LOC_Os07g11050.1	1	"IPP transferase, putative, expressed"
Zea mays	GRMZM2G104559_P01	1	Isopentenyl transferase IPT4

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	molecular_function
GO:0008033	tRNA processing	biological_process

KEGG

KO	Description	Enzyme
K10760	adenylate dimethylallyltransferase (cytokinin synthase)	EC:2.5.1.27 2.5.1.112

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01715.13	IPPT	68	144	5.80E-24
PF01715.13	IPPT	151	248	1.30E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.10141
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.402092
SRR5252886	dormant buds	no	dormant buds(1 months)	0.352733
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0937215
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.981449
SRR5252880	dormant buds	no	dormant buds(4 months)	0.89889
SRR5252881	dormant buds	no	dormant buds(4 months)	0.997731
SRR5252878	bud break	no	bud break	3.28284
SRR5252879	bud break	no	bud break	2.81297
SRR3744766	flower	no	mature	1.61307
SRR3744767	flower	no	mature	1.35828
SRR3744768	flower	no	mature	1.23054
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.203581
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.630867
SRR6308192	pollen	no	open flowers	5.39616
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.707276
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.140544
SRR3384921	fruit	no	2 week after full bloom	1.06491
SRR3384920	fruit	no	3 week after full bloom	0.870697
SRR3384919	fruit	no	4 week after full bloom	2.22756
SRR3384923	fruit	no	5 week after full bloom	1.00035
SRR3384918	fruit	no	6 week after full bloom	1.24461
SRR3384917	fruit	no	8 week after full bloom	0.662013
SRR3384916	fruit	no	10 week after full bloom	0.307146
SRR3384915	fruit	no	12 week after full bloom	0.29073
SRR3384914	fruit	no	14 week after full bloom	0.211475
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.298925
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.42229
SRR768129	whole fruit	no	35 days post anthesis	1.29846
SRR768130	whole fruit	no	60 days post anthesis	0.311
SRR768131	whole fruit	no	87 days post anthesis	1.28751
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0.414674
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.0823478
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.107769
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.0209197
SRR1613974	Central seeds	no	20DAPF	0.0143723
SRR1613975	Central seeds	no	20DAPF	0.0390254
SRR1613976	Lateral seeds	no	20DAPF	0.0307872
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0.0182305
SRR3744786	stem	no	mature	64.2746
SRR3744787	stem	no	mature	63.8396
SRR3744772	stem	no	mature	61.037
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.165589
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.107996
SRR1089478	leaf	Virus-free	plantlets	2.42534
SRR1089477	leaf	ASGV-infected	plantlets	2.71745
SRR767660	leaf	uninfected	fully developed	12.2961
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.03868
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.53026
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	18.7772
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.3068
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.88552
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.96175
SRR6308182	young leaf	no	immature leaves	0.254519
SRR3744769	leaf	no	mature	5.78014
SRR3744770	leaf	no	mature	4.62772
SRR3744771	leaf	no	mature	5.01145
SRR5405145	leaf	no	mature	0.960957
SRR6320561	leaf	no	mature	1.76203