Gene detail

Detail information of MD03G1274100 Annotation

Gene ID	Annotation
MD03G1274100	BRI1 suppressor 1 (BSU1)-like 1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1274100	mRNA	Chr03	35710860	35716942	+

Sequences

CDS:

MD03G1274100

GCACGACAATCTCAGCGATCAAAGCTTCATCATCGTCACCGCGTAGAAAGTTGAGAGAGAGAAAAAAGTAGAGAGTAGAGAGAGGGAATCAGGAGATCAAATCAGACGGCTCTGGCGGTGGTGCTGCTCCTGCTTCCGGGTTTGGGTTTTGATGGGTTCGAAGCCATGGCTGTACCCGGCGCCGACCTATCGTACTCTCGAGACCTATTGGGATTGCGACGACGACGCCCCTGGTCCCCGCTGCGCTCACACCCTCACCGCCGTCGCCGCCACTAAGACCCATGGCCCCCGTCTCATCCTCTTCGGCGGTGCCACCGCCATTGAAGGCGGCGCTGCCTCCGCCCCTGGCATCAGGTTAGCTGGGGTGACCAATTCGGTGCATTCGTACGATGTTCTCACCAGGAAATGGACTAGAATGAGGCCTGCAGGTGAGCCACCGTCTCCGAGGGCAGCTCACGCGGCGGCTGCGGTGGGCACTATGGTTGTATTTCAGGGTGGTATAGGTCCTGCTGGGCATTCCACAGATGATCTATACGTGCTGGACTTGACCAACGATAAGTTTAAATGGCACAGAGTGGTTGTACAAGGACAAGGTCCTGGGCCTCGCTACGGCCATGTAATGGACTTAGTTGCTCAAAGATATCTTGTTACTGTCAGTGGAAACGATGGAAAAAGAGTCCTTTCTGATGCCTGGGCTCTGGATACTGCTCAGAAGCCTTATGCATGGGCTAGGCTGAGCCCAGAAGGTGATAGGCCTTCTGCTAGAATGTATGCAACAGCCAGTGCCCGCTCAGATGGTATGTTTTTGCTTTGTGGTGGAAGAGATATTTCTGGAGCGCCACTAGCAGACGCTTATGGACTGCTTATGCATAGAAATGGTCAGTGGGAGTGGACCCTTGCACCTGGAGTATCACCTTCACCAAGGTATCAACATGCGGCGGTTTTTGTTGGGGCAAGATTACATGTTACAGGAGGTACTCTTAGGGGAGGCCGTTGTATAGAAGGCGAAGCAGCTGTTGCAGTATTGGACACTGCTGCTGGAGTTTGGTTAGACAGAAATGGGCTTGTGACTTCCTCACGCACAGGAAAGGGACAGAATGATTATGATCCTCCTTTGGAGCTCATGCGTCGTTGCCGCCATGCAGCTGCATCTCTTGGTGTTCGTATATACATTTATGGTGGTCTTAAGGGAGACATCCTGTTAGATGACTTCCTAGTTGCAGAAAATTCATTATTTCAGTCTGAAGGTAATTCGCCTGTTTTAACTTCTGAGAGACCCCCAACTGTATCAAGTCCCAGAATGTTTCATGCCAACACAAGTACTTTTGGAACATCATCTGATGGTGAACATGAGAGTCCCTCATCAAGTCGCTCAAGCATGGACAAAAGTTCAATGGAGAAACTCCGGGAGGCTTCTGCTGCCGAAGCTGAGGCAGCTAGTGCTGTTTGGCAAGCTGTGCAGTCAACATCTGCTACTCCTGCTGAAGAAACATCTGTTTCAGATGATAACTCGCAAGTTGCAGAAACATTGTCGGATGGTAGTGACACTGAGGCTGATGTTCGCCTTCATCACAGAGCTGTTGTTGTTGCCAAAGAGGCTGTAGGTAACTTGGGTGGGATGGTAAGACAGTTGTCTTTGGACCAATTTGAAAATGAAAGCAGACGAATGATTCCAATGAATAATGACTTATCATATCCCAACAAAAAGTTCACCAGGCAGAAGTCTCCACAAGGGCTACATAAAAAGGTTATATCTACATTGTTGAGGCCTCGAAACTGGAAAGCCCCTGTCAATAGGAAGTTTTTCATGGATTCTTATGAAGTGGGAGAACTTTGTTATGCTGCTGAGCAGATCTTTATGCAGGAGCAAACAGTTCTTCAGCTGAAAGCCCCTGTTAAAGTATTTGGCGATCTTCATGGACAGTTTGGTGATTTAATGCGCTTATTTGATGAATATGGATTTCCATCTGCTGCCGGAGACATAACGTATATCGACTACTTGTTTTTGGGGGATTATGTCGATCGAGGACAGCACAGCTTGGAGACCATAACTTTGCTCCTTGCACTGAAGATTGAGCATCCTGACAATGTTCACTTAATACGTGGAAACCATGAAGCTGCTGATATAAATGCACTCTTTGGTTTTCGTATTGAATGCATTGAGAGAATGGGCGAGAATGATGGAATATGGGCATGGACTCGATTCAATCAACTTTTCAACTATCTCCCACTTGCTGCTCTAATTGAAAAGAAAATTATCTGTATGCATGGAGGCATTGGGAGATCCATCAATTCTTTAGAACAGATAGAGAAGCTTGAAAGACCCATTACAATGGATGCTGGGTCTATAGTTTTAATGGATCTTTTGTGGTCTGATCCCACAGAAAACGATAGTGTAGAGGGCTTGAGACCAAATGCCAGAGGGCCTGGTCTTGTCACCTTTGGGCCTGATCGTGTCACGGAATTCTGTAAAAGAAACAAATTACAACTCATTATACGAGCTCATGAATGCGTCATGGATGGATTTGAAAGATTTGCCCAGGGACAGTTGATCACTCTTTTCTCTGCAACCAACTATTGCGGGACGGCAAACAATGCTGGTGCTATACTGGTTGTTGGCAGAGGTTTGGTTGTGGTTCCGAAATTAATCCATCCTTTGCCACCTCCTCTTCAGTCACCGGAGACATCTCCTGAACGGGTCATAGACGACACATGGATGCAGGAGCTCAACATTCAAAGACCACCAACACCTACTCGTGGCCGACCACAGCCTGATCTTGATCGAAACTCACTTGCATATATATAGCTGACAGATTTCTGTATTTTACAACTACTGAATGTGACAATCCACATTTCTCTAGAGGTATGATCCTTTTCCAATTCCCACATTCTGGATTGCCTCGCTCAACACAGCGCGCTGTCATGTTCTCATCGAAGTTGCAGAGGTTGAAGCCTTGTCTAGTGTACACAATCTGAGAATGCTAGAAATTTAGATGTTTCGGGACCGAATTATTCATTCCTCGTTGATCGATTTTGTAACATATGTACAACAACATGGTTTGTGGAAGAGATGTAAAAGTGTTTTCAAGTTTTTGAAGATAAATAGATAGAACTTATAGGGAAGGGAAATTGGTTAATTTAGTTTCACTGTGATATATGTAACATAAATAATATCGTACATTTGATTCATTTTAAAGTGTTTATTCTCTTGTGGAAAATCATGTTTCAGAACAACCTTAGATTTGC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G03080.1	1	BSL1\|BRI1 suppressor 1 (BSU1)-like 1
Prunus persica	Prupe.8G250300.1.p	1	BRI1 suppressor 1 (BSU1)-like 1
Pyrus communis	PCP042484.1	1	-
Rubus occidentalis	Ro02_G09625	1	-
Fragaria vesca	mrna27763.1	1	BRI1 suppressor 1 (BSU1)-like 2
Vitis vinifera	GSVIVT01011026001	1	BRI1 suppressor 1 (BSU1)-like 1
Solanum lycopersicum	Solyc09g074320.2.1	1	BRI1 suppressor 1 (BSU1)-like 1
Solanum lycopersicum	Solyc06g073960.2.1	1	BRI1 suppressor 1 (BSU1)-like 2
Populus trichocarpa	Potri.014G135800.1	1	BRI1 suppressor 1 (BSU1)-like 1
Nicotiana benthamiana	Niben101Scf05301g00016.1	1	Serine/threonine protein phosphatase family protein LENGTH=793
Nicotiana benthamiana	Niben101Scf21770g00007.1	0.892	Serine/threonine protein phosphatase family protein LENGTH=793
Oryza sativa	LOC_Os05g05240.1	1	"serine/threonine protein phosphatase, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0030145	manganese ion binding	molecular_function
GO:0005515	protein binding	molecular_function
GO:0004721	phosphoprotein phosphatase activity	molecular_function
GO:0005506	iron ion binding	molecular_function

KEGG

KO	Description	Enzyme
K01090	protein phosphatase	EC:3.1.3.16

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00149.24	Metallophos	581	788	1.00E-31

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.20809
SRR5252888	dormant buds	no	dormant buds(0 month)	15.4766
SRR5252889	dormant buds	no	dormant buds(0 month)	15.9555
SRR5252886	dormant buds	no	dormant buds(1 months)	14.4668
SRR5252887	dormant buds	no	dormant buds(1 months)	19.3506
SRR5252884	dormant buds	no	dormant buds(2 months)	18.2059
SRR5252882	dormant buds	no	dormant buds(3 months)	13.7868
SRR5252883	dormant buds	no	dormant buds(3 months)	19.3522
SRR5252880	dormant buds	no	dormant buds(4 months)	14.7571
SRR5252881	dormant buds	no	dormant buds(4 months)	14.8642
SRR5252878	bud break	no	bud break	11.2462
SRR5252879	bud break	no	bud break	6.90245
SRR3744766	flower	no	mature	14.3522
SRR3744767	flower	no	mature	15.2211
SRR3744768	flower	no	mature	15.2611
SRR6308190	stigmas	no	open flowers	9.9957
SRR6308181	styles	no	open flowers	10.6442
SRR6308188	filaments	no	open flowers	8.27055
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	13.2253
SRR6308192	pollen	no	open flowers	19.4598
SRR6308191	petals	no	open flowers	15.2352
SRR6308194	sepals	no	open flowers	14.7628
SRR6308193	receptacles	no	open flowers	6.69774
SRR6308189	ovaries	no	open flowers	8.43315
SRR3384922	fruit	no	1 week after full bloom	5.46762
SRR3384921	fruit	no	2 week after full bloom	6.26493
SRR3384920	fruit	no	3 week after full bloom	6.19713
SRR3384919	fruit	no	4 week after full bloom	5.70354
SRR3384923	fruit	no	5 week after full bloom	6.00149
SRR3384918	fruit	no	6 week after full bloom	5.39522
SRR3384917	fruit	no	8 week after full bloom	4.64044
SRR3384916	fruit	no	10 week after full bloom	6.71726
SRR3384915	fruit	no	12 week after full bloom	7.79496
SRR3384914	fruit	no	14 week after full bloom	7.01646
SRR3384913	fruit	no	16 week after full bloom	7.42034
SRR3384912	fruit	no	18 week after full bloom	6.88168
SRR3384911	fruit	no	19 week after full bloom	6.33842
SRR3384910	fruit	no	20 week after full bloom	6.84949
SRR768128	whole fruit	no	25 days post anthesis	6.92306
SRR768129	whole fruit	no	35 days post anthesis	4.24176
SRR768130	whole fruit	no	60 days post anthesis	6.29113
SRR768131	whole fruit	no	87 days post anthesis	11.159
SRR7343308	immature fruit flesh	no	immature	11.4843
SRR7343309	immature fruit flesh	no	immature	12.3223
SRR6320494	ripe fruit flesh	no	mature	11.7481
SRR5405143	ripe fruit peel	no	mature	12.5387
SRR6320572	ripe fruit peel	no	mature	15.0157
SRR7403504	fruit	uninfected	mature	10.0405
SRR7403506	fruit	uninfected	mature	10.5629
SRR7403507	fruit	uninfected	mature	10.4972
SRR7403500	fruit	infected with penicillium expansum	mature	30.3047
SRR7403501	fruit	infected with penicillium expansum	mature	30.734
SRR7403508	fruit	infected with penicillium expansum	mature	31.4728
SRR7403502	fruit	infected with penicillium expansum	mature	25.9728
SRR7403503	fruit	infected with penicillium expansum	mature	26.0661
SRR7403505	fruit	infected with penicillium expansum	mature	26.0467
SRR1613973	Central seeds	no	20DAPF	5.23174
SRR1613974	Central seeds	no	20DAPF	6.08856
SRR1613975	Central seeds	no	20DAPF	5.66449
SRR1613976	Lateral seeds	no	20DAPF	5.49497
SRR1613977	Lateral seeds	no	20DAPF	5.53193
SRR1613978	Lateral seeds	no	20DAPF	6.41761
SRR3744786	stem	no	mature	19.3575
SRR3744787	stem	no	mature	19.0398
SRR3744772	stem	no	mature	19.4544
SRX765691	seedling shoot apex	no	4-6 week old seedling	8.65025
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.70694
SRR1089478	leaf	Virus-free	plantlets	6.74943
SRR1089477	leaf	ASGV-infected	plantlets	6.48903
SRR767660	leaf	uninfected	fully developed	5.49947
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0.764819
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.62769
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.49226
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	4.84999
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.84678
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	4.98384
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	5.71924
SRR6308182	young leaf	no	immature leaves	6.29249
SRR3744769	leaf	no	mature	16.4606
SRR3744770	leaf	no	mature	17.3985
SRR3744771	leaf	no	mature	17.5094
SRR5405145	leaf	no	mature	16.9683
SRR6320561	leaf	no	mature	12.436