Gene detail

Detail information of MD03G1287600 Annotation

Gene ID	Annotation
MD03G1287600	NADH-ubiquinone oxidoreductase-related

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0316	phospholipase activator activity ADP-ribosylation factor 1 mitochondrial respiratory chain complex I NADH dehydrogenase (ubiquinone) flavoprotein 2 [EC:1.6.5.3 1.6.99.3] mitochondrial pyruvate carrier 2 small GTPase mediated signal transduction photorespiration singlet oxygen-mediated programmed cell death mitochondrial electron transport response to singlet oxygen

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1287600	mRNA	Chr03	36660401	36663020	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G47690.1	1	NADH-ubiquinone oxidoreductase-related
Prunus persica	Prupe.8G260800.1.p	1	NADH-ubiquinone oxidoreductase-related
Pyrus communis	PCP040782.1	1	-
Pyrus x bretschneideri	Pbr026371.1	1	-
Rubus occidentalis	Ro02_G01335	1	-
Vitis vinifera	GSVIVT01035146001	1	NADH-ubiquinone oxidoreductase-related
Solanum lycopersicum	Solyc11g005880.1.1	1	NADH-ubiquinone oxidoreductase-related
Populus trichocarpa	Potri.014G129600.8	1	NADH-ubiquinone oxidoreductase-related
Nicotiana benthamiana	Niben101Scf04872g00019.1	1	NADH-ubiquinone oxidoreductase-related LENGTH=83
Oryza sativa	LOC_Os08g44250.1	1	"fiber protein Fb14, putative"
Zea mays	GRMZM2G149414_P01	1	Fb14

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	85.7992
SRR5252888	dormant buds	no	dormant buds(0 month)	15.9821
SRR5252889	dormant buds	no	dormant buds(0 month)	12.3429
SRR5252886	dormant buds	no	dormant buds(1 months)	14.0181
SRR5252887	dormant buds	no	dormant buds(1 months)	17.4672
SRR5252884	dormant buds	no	dormant buds(2 months)	10.6658
SRR5252882	dormant buds	no	dormant buds(3 months)	18.1029
SRR5252883	dormant buds	no	dormant buds(3 months)	12.7772
SRR5252880	dormant buds	no	dormant buds(4 months)	9.44403
SRR5252881	dormant buds	no	dormant buds(4 months)	17.091
SRR5252878	bud break	no	bud break	15.1322
SRR5252879	bud break	no	bud break	28.1179
SRR3744766	flower	no	mature	36.0812
SRR3744767	flower	no	mature	33.8291
SRR3744768	flower	no	mature	36.1801
SRR6308190	stigmas	no	open flowers	49.2929
SRR6308181	styles	no	open flowers	46.3321
SRR6308188	filaments	no	open flowers	48.6256
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	69.3418
SRR6308192	pollen	no	open flowers	224.617
SRR6308191	petals	no	open flowers	39.1162
SRR6308194	sepals	no	open flowers	28.2917
SRR6308193	receptacles	no	open flowers	63.3953
SRR6308189	ovaries	no	open flowers	42.1261
SRR3384922	fruit	no	1 week after full bloom	80.9305
SRR3384921	fruit	no	2 week after full bloom	82.5964
SRR3384920	fruit	no	3 week after full bloom	99.7249
SRR3384919	fruit	no	4 week after full bloom	90.9434
SRR3384923	fruit	no	5 week after full bloom	77.2891
SRR3384918	fruit	no	6 week after full bloom	72.3875
SRR3384917	fruit	no	8 week after full bloom	75.4643
SRR3384916	fruit	no	10 week after full bloom	69.3989
SRR3384915	fruit	no	12 week after full bloom	76.9302
SRR3384914	fruit	no	14 week after full bloom	66.8795
SRR3384913	fruit	no	16 week after full bloom	78.5452
SRR3384912	fruit	no	18 week after full bloom	73.0697
SRR3384911	fruit	no	19 week after full bloom	71.107
SRR3384910	fruit	no	20 week after full bloom	64.9807
SRR768128	whole fruit	no	25 days post anthesis	56.4018
SRR768129	whole fruit	no	35 days post anthesis	73.2676
SRR768130	whole fruit	no	60 days post anthesis	51.5
SRR768131	whole fruit	no	87 days post anthesis	27.3258
SRR7343308	immature fruit flesh	no	immature	21.7259
SRR7343309	immature fruit flesh	no	immature	18.3162
SRR6320494	ripe fruit flesh	no	mature	45.7327
SRR5405143	ripe fruit peel	no	mature	20.1051
SRR6320572	ripe fruit peel	no	mature	54.5276
SRR7403504	fruit	uninfected	mature	37.6688
SRR7403506	fruit	uninfected	mature	33.4025
SRR7403507	fruit	uninfected	mature	35.1349
SRR7403500	fruit	infected with penicillium expansum	mature	80.3538
SRR7403501	fruit	infected with penicillium expansum	mature	89.1272
SRR7403508	fruit	infected with penicillium expansum	mature	78.6269
SRR7403502	fruit	infected with penicillium expansum	mature	62.3778
SRR7403503	fruit	infected with penicillium expansum	mature	67.8976
SRR7403505	fruit	infected with penicillium expansum	mature	65.1309
SRR1613973	Central seeds	no	20DAPF	64.8577
SRR1613974	Central seeds	no	20DAPF	61.1811
SRR1613975	Central seeds	no	20DAPF	75.1196
SRR1613976	Lateral seeds	no	20DAPF	63.744
SRR1613977	Lateral seeds	no	20DAPF	77.9798
SRR1613978	Lateral seeds	no	20DAPF	72.9849
SRR3744786	stem	no	mature	20.1679
SRR3744787	stem	no	mature	21.6913
SRR3744772	stem	no	mature	20.983
SRX765691	seedling shoot apex	no	4-6 week old seedling	33.0802
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	42.9559
SRR1089478	leaf	Virus-free	plantlets	21.7907
SRR1089477	leaf	ASGV-infected	plantlets	27.6079
SRR767660	leaf	uninfected	fully developed	26.4483
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	42.5414
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	40.7409
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	80.745
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	41.0139
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	17.9574
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	30.0033
SRR6308182	young leaf	no	immature leaves	51.8241
SRR3744769	leaf	no	mature	18.5998
SRR3744770	leaf	no	mature	20.4249
SRR3744771	leaf	no	mature	18.7672
SRR5405145	leaf	no	mature	9.15839
SRR6320561	leaf	no	mature	27.1641