Gene detail

Detail information of MD03G1296300 Annotation

Gene ID	Annotation
MD03G1296300	secretion-associated RAS super family 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD03G1296300	mRNA	Chr03	37208462	37210624	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.8G271000.2.p	1	secretion-associated RAS super family 2
Prunus persica	Prupe.8G271000.1.p	1	secretion-associated RAS super family 2
Pyrus communis	PCP034989.1	1	-
Pyrus x bretschneideri	Pbr022677.1	1	-
Rosa multiflora	Rmu_sc0026340.1_g000006.1	1	-
Vitis vinifera	GSVIVT01028107001	1	secretion-associated RAS super family 2
Oryza sativa	LOC_Os06g12090.1	1	"miro, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0006886	intracellular protein transport	biological_process
GO:0005525	GTP binding	molecular_function
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K07953	GTP-binding protein SAR1	EC:3.6.5.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00025.17	Arf	8	192	5.50E-66

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	68.0242
SRR5252888	dormant buds	no	dormant buds(0 month)	28.4424
SRR5252889	dormant buds	no	dormant buds(0 month)	27.5069
SRR5252886	dormant buds	no	dormant buds(1 months)	23.0019
SRR5252887	dormant buds	no	dormant buds(1 months)	34.3635
SRR5252884	dormant buds	no	dormant buds(2 months)	34.9897
SRR5252882	dormant buds	no	dormant buds(3 months)	26.5966
SRR5252883	dormant buds	no	dormant buds(3 months)	37.9376
SRR5252880	dormant buds	no	dormant buds(4 months)	29.8616
SRR5252881	dormant buds	no	dormant buds(4 months)	27.8255
SRR5252878	bud break	no	bud break	24.235
SRR5252879	bud break	no	bud break	17.7124
SRR3744766	flower	no	mature	51.4669
SRR3744767	flower	no	mature	52.8693
SRR3744768	flower	no	mature	56.6213
SRR6308190	stigmas	no	open flowers	69.0174
SRR6308181	styles	no	open flowers	58.3697
SRR6308188	filaments	no	open flowers	43.1345
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	42.8122
SRR6308192	pollen	no	open flowers	22.0393
SRR6308191	petals	no	open flowers	48.451
SRR6308194	sepals	no	open flowers	38.4421
SRR6308193	receptacles	no	open flowers	37.9447
SRR6308189	ovaries	no	open flowers	47.1741
SRR3384922	fruit	no	1 week after full bloom	59.9219
SRR3384921	fruit	no	2 week after full bloom	65.9849
SRR3384920	fruit	no	3 week after full bloom	69.721
SRR3384919	fruit	no	4 week after full bloom	82.9893
SRR3384923	fruit	no	5 week after full bloom	82.6149
SRR3384918	fruit	no	6 week after full bloom	97.7707
SRR3384917	fruit	no	8 week after full bloom	84.6004
SRR3384916	fruit	no	10 week after full bloom	73.2434
SRR3384915	fruit	no	12 week after full bloom	76.376
SRR3384914	fruit	no	14 week after full bloom	69.043
SRR3384913	fruit	no	16 week after full bloom	93.0698
SRR3384912	fruit	no	18 week after full bloom	82.0681
SRR3384911	fruit	no	19 week after full bloom	104
SRR3384910	fruit	no	20 week after full bloom	97.9889
SRR768128	whole fruit	no	25 days post anthesis	35.598
SRR768129	whole fruit	no	35 days post anthesis	61.2021
SRR768130	whole fruit	no	60 days post anthesis	66.8787
SRR768131	whole fruit	no	87 days post anthesis	50.9155
SRR7343308	immature fruit flesh	no	immature	59.3206
SRR7343309	immature fruit flesh	no	immature	58.2199
SRR6320494	ripe fruit flesh	no	mature	47.6142
SRR5405143	ripe fruit peel	no	mature	61.035
SRR6320572	ripe fruit peel	no	mature	48.0769
SRR7403504	fruit	uninfected	mature	48.5372
SRR7403506	fruit	uninfected	mature	46.9702
SRR7403507	fruit	uninfected	mature	47.536
SRR7403500	fruit	infected with penicillium expansum	mature	57.8319
SRR7403501	fruit	infected with penicillium expansum	mature	69.2818
SRR7403508	fruit	infected with penicillium expansum	mature	63.3251
SRR7403502	fruit	infected with penicillium expansum	mature	46.5013
SRR7403503	fruit	infected with penicillium expansum	mature	42.0997
SRR7403505	fruit	infected with penicillium expansum	mature	44.1154
SRR1613973	Central seeds	no	20DAPF	42.2739
SRR1613974	Central seeds	no	20DAPF	41.4827
SRR1613975	Central seeds	no	20DAPF	46.9048
SRR1613976	Lateral seeds	no	20DAPF	43.6178
SRR1613977	Lateral seeds	no	20DAPF	49.9111
SRR1613978	Lateral seeds	no	20DAPF	45.8593
SRR3744786	stem	no	mature	64.9306
SRR3744787	stem	no	mature	70.5918
SRR3744772	stem	no	mature	67.34
SRX765691	seedling shoot apex	no	4-6 week old seedling	19.6706
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	19.1015
SRR1089478	leaf	Virus-free	plantlets	16.707
SRR1089477	leaf	ASGV-infected	plantlets	15.3973
SRR767660	leaf	uninfected	fully developed	19.1144
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	25.139
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	21.3381
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	84.4926
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	37.6322
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	35.8738
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	25.7368
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	34.2134
SRR6308182	young leaf	no	immature leaves	24.2803
SRR3744769	leaf	no	mature	54.038
SRR3744770	leaf	no	mature	46.9979
SRR3744771	leaf	no	mature	48.993
SRR5405145	leaf	no	mature	27.1706
SRR6320561	leaf	no	mature	28.284