Gene detail

Detail information of MD04G1001900 Annotation

Gene ID	Annotation
MD04G1001900	evolutionarily conserved C-terminal region 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0261	nucleotide biosynthetic process post-embryonic organ development leucine-tRNA ligase activity regulation of auxin polar transport leucyl-tRNA aminoacylation lateral root formation root meristem growth cytosol spermidine biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1001900	mRNA	Chr04	231832	245109	+

Sequences

CDS:

MD04G1001900

CTTTTATTATTTTTCCCTCTTTCAAAACACCAAAAACCCCTCTCTGTTTCTCTCTCCCCTCCAACATTTTCTCATTGTTTTGAAATTTTCCTTTCGTCGTAGCTGCTTCTCTTCTCATAGATCCCTATCTTAGATATATGGACAAGCATCAAGGCGACCAAGATCGGATCGTCTCCACTGGAGAGAGACCTGTTAAGTCACATATCTTGAAAGAGCAGCCACTTTTGCCCGAAGATGAAAGAATAGTTTCAGCGAATCCTTCTCCAGCTGCAGTCATCATAGGGCCTTCAGATGATGTTACAGAACAACCCAAGTCTTCAGATGTTAGTGGAGCACGAAGCACCCCCCATCTGCTTAATTTGTATTCATCTCATGAACGGAACATTTATGGTGATTATGGCAATAACACAGGTACTTGGGATGGATATTCTCCATATAATGCTGATGGAATGCATGTTTTATCACCAGTCATCTACAATGATTATCGCTCTCTTCTGTTTCACTCTGGTTATGGCTTTAATCCCGAAATTGCATATGGACAGTATTCACCAGTCGCTACTCCTTTGCCTGTAATGGTAGATGGCCAACTTTATTCTACACAGCAGGTCCCTTTTTCTCCATCTTACTACCCCCAGCCATCTGAGTTGATGACATCAGAAAGTAGTAGCACTGACAACATGGGCTATGGGCCAGGATCAGGTTACATGGTAAATTATAGATCATTTAGTGGAGATCTGTCTGGACATCTTGGTTCTAGTCCTTTAGCATCGGCAACAATTTATTCTCCACCAACGGGCATTTTTGGGTCATACGAACACAATGCTGGGCAGATTTCTCATCAACAGAGACCAATGCATGGATACGGATTGGTTTCAAGTTCCTTTGGTGGACGCTATCCTCCTGGTAGTTCTTATCAGAGCTCAAACTCTGGTGGTGCTTCATATTCATTTGGTAATGACCAGAACCGACCAAATGTTGACAAGGCCAGAAGAAGAGAGAGGGACTGGGATTCAGTTTCCATTTATAATAATTCACATGATATCTTCAATAACCGCATTCATGGACCAAGGGCTTTGAAGATGAAGGGAAAGAGTACTTCCGACCAGAGTTCTTCATGTAGTGTTAGGAAAATGGATCTATCTGCTTCTGGAATTAACCTTGATTCATTGAACCGGCTCGATTTTGTCACAGAATATGAGGATGCAAAATTCTTTATCGTTAAGTCTTTCAGTGAGGACAATGTTCACAAAAGTATTAAATACAATGTTTGGGCTAGCACGCCTCATGGAAACAAGAAACTTGATGCTGCTTATCATGAGGCAAAGAAGATAAAAGGCAGCTGCGCAGTCTTCCTATTCTTTTCGGTTAATGCTAGCGGACAGTTTTGTGGAGTAGCGGAAATGGTGGGACCTGTAGATTTTGAGAAGGATGCTGATTACTGGCAGCAGGAAAGGTGGAGTGGGCAATTTCCGGTTCAGTGGCATATTGTAAAGGATGTTCCTAACATTCGGTTCCGTCACATTCTACTTGAAAATAATGATAATAAGCCTGTCACGCACAGCCGAGATTGTCAGGAGGTGAATCTCAAACAAGGTATTGAGCTGTTGAAAATTTTCAACAATTTTGATGCACGAACATCTATTATAGATGATTTTGAATTTTATGATGAGCGGGAAAATTCCTTGAAGGAAAGGAAAGTTAAACAACAAGCTAGTTCGACTACAGATGCTTCTGATTCAGTTGCCGTTGATTCTGTTAAGGAAATTTCCAATAGTTTGGATCAAGCCCTGCAGTTGAAAGGAAGTAGTAGCAAAGAAGTGGAAAAAACTGAACATGACATTAGCTCAAAAACAGATGCTGCGTCAGTTATACTTGAACATGATTCATCCGTGGACCAAATATCTGATAACTTATCTCAAGTATTGCAGTTGGAAGAGGGTGACAAAGAATTAGCTCCGTCATCTGAAAGCAGTAAAGGTGGAGACGACAGCGAGTCGGTTGACAGGAAGGCAACAGTTGTATCAACTACTAGTGCTTAGGCATTTTAGGCATGCATGCGGCGACAACAGAATGTACTTTTGTGATGTTTAAGAGTAGTTCACTCGCTGACAAAGTATGAGGTGGTAATTTTGTCATCTCAAGCAGTCAGGATGCAAGCTGACTCCGTTTCTAACCTCTTTCTTTTCCAGAGAAATTAGGCGGTACTCCGAGAGGGTGTGCCGGGCAGGAAGGCTGTTTGATTTTGTATTTGAAGCTCATTTTGTGTTTCTCCTCGTTGTAGGGTTAGAATTAGGTTGTTGGTTTTGGCGATGTGGTGAATGCAATGCAGGTTGTATCTGTATACTATTGTCCGCCTGTCTGAGATGCCTTTTAGTGGTTGTAATTTTAGGGTTGTCTTACTGGTTTTCTGCTGGCGGCTCAACTGGGTAACGGAGGAAGAAGAATCTGTCGTGTTACCCCTCCATTTCGATTTGGGATTGGGAGGTTGATCAATCGATAAAAGAATGAATGAATTCAGAAAATGCATTTACTTTTAC

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.1G002400.1.p	1	evolutionarily conserved C-terminal region 5
Rosa multiflora	Rmu_ssc0000137.1_g000001.1	1	-
Vitis vinifera	GSVIVT01032236001	1	evolutionarily conserved C-terminal region 5
Solanum lycopersicum	Solyc05g032850.2.1	1	evolutionarily conserved C-terminal region 5
Populus trichocarpa	Potri.006G079900.1	1	evolutionarily conserved C-terminal region 10
Populus trichocarpa	Potri.018G149800.1	0.613	evolutionarily conserved C-terminal region 10
Nicotiana benthamiana	Niben101Scf08176g00008.1	1	evolutionarily conserved C-terminal region 5 LENGTH=634
Nicotiana benthamiana	Niben101Scf06461g04015.1	0.802	evolutionarily conserved C-terminal region 5 LENGTH=634

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
K20102	YTH domain-containing family protein	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04146.11	YTH	357	494	2.20E-43

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.52697
SRR5252888	dormant buds	no	dormant buds(0 month)	9.8145
SRR5252889	dormant buds	no	dormant buds(0 month)	7.94766
SRR5252886	dormant buds	no	dormant buds(1 months)	9.84478
SRR5252887	dormant buds	no	dormant buds(1 months)	8.319
SRR5252884	dormant buds	no	dormant buds(2 months)	9.86136
SRR5252882	dormant buds	no	dormant buds(3 months)	10.4399
SRR5252883	dormant buds	no	dormant buds(3 months)	10.1785
SRR5252880	dormant buds	no	dormant buds(4 months)	10.2134
SRR5252881	dormant buds	no	dormant buds(4 months)	7.5323
SRR5252878	bud break	no	bud break	13.1087
SRR5252879	bud break	no	bud break	10.0314
SRR3744766	flower	no	mature	2.10976
SRR3744767	flower	no	mature	2.22919
SRR3744768	flower	no	mature	1.93226
SRR6308190	stigmas	no	open flowers	1.04328
SRR6308181	styles	no	open flowers	1.08735
SRR6308188	filaments	no	open flowers	1.41724
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.831
SRR6308192	pollen	no	open flowers	7.89593
SRR6308191	petals	no	open flowers	1.7587
SRR6308194	sepals	no	open flowers	1.88055
SRR6308193	receptacles	no	open flowers	2.24986
SRR6308189	ovaries	no	open flowers	1.37191
SRR3384922	fruit	no	1 week after full bloom	2.37892
SRR3384921	fruit	no	2 week after full bloom	1.80949
SRR3384920	fruit	no	3 week after full bloom	1.47072
SRR3384919	fruit	no	4 week after full bloom	1.38704
SRR3384923	fruit	no	5 week after full bloom	1.13062
SRR3384918	fruit	no	6 week after full bloom	1.22865
SRR3384917	fruit	no	8 week after full bloom	0.951825
SRR3384916	fruit	no	10 week after full bloom	0.730659
SRR3384915	fruit	no	12 week after full bloom	1.06401
SRR3384914	fruit	no	14 week after full bloom	0.999689
SRR3384913	fruit	no	16 week after full bloom	0.873604
SRR3384912	fruit	no	18 week after full bloom	0.962412
SRR3384911	fruit	no	19 week after full bloom	1.23075
SRR3384910	fruit	no	20 week after full bloom	0.669199
SRR768128	whole fruit	no	25 days post anthesis	2.36431
SRR768129	whole fruit	no	35 days post anthesis	1.65997
SRR768130	whole fruit	no	60 days post anthesis	1.35587
SRR768131	whole fruit	no	87 days post anthesis	0.805716
SRR7343308	immature fruit flesh	no	immature	2.65714
SRR7343309	immature fruit flesh	no	immature	2.65023
SRR6320494	ripe fruit flesh	no	mature	0.729273
SRR5405143	ripe fruit peel	no	mature	1.58556
SRR6320572	ripe fruit peel	no	mature	0.317721
SRR7403504	fruit	uninfected	mature	1.10803
SRR7403506	fruit	uninfected	mature	1.3215
SRR7403507	fruit	uninfected	mature	1.21042
SRR7403500	fruit	infected with penicillium expansum	mature	2.40187
SRR7403501	fruit	infected with penicillium expansum	mature	1.71361
SRR7403508	fruit	infected with penicillium expansum	mature	2.52007
SRR7403502	fruit	infected with penicillium expansum	mature	2.55964
SRR7403503	fruit	infected with penicillium expansum	mature	3.11494
SRR7403505	fruit	infected with penicillium expansum	mature	3.75884
SRR1613973	Central seeds	no	20DAPF	2.69403
SRR1613974	Central seeds	no	20DAPF	3.45714
SRR1613975	Central seeds	no	20DAPF	2.89873
SRR1613976	Lateral seeds	no	20DAPF	2.50629
SRR1613977	Lateral seeds	no	20DAPF	2.42079
SRR1613978	Lateral seeds	no	20DAPF	3.05202
SRR3744786	stem	no	mature	2.05314
SRR3744787	stem	no	mature	2.4364
SRR3744772	stem	no	mature	2.25649
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.35263
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.00001
SRR1089478	leaf	Virus-free	plantlets	1.4874
SRR1089477	leaf	ASGV-infected	plantlets	1.73064
SRR767660	leaf	uninfected	fully developed	1.13203
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.50627
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.812317
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.78791
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.668056
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.36742
SRR6308182	young leaf	no	immature leaves	5.39435
SRR3744769	leaf	no	mature	1.51592
SRR3744770	leaf	no	mature	1.87426
SRR3744771	leaf	no	mature	1.45635
SRR5405145	leaf	no	mature	1.32172
SRR6320561	leaf	no	mature	1.87244