Gene detail

Detail information of MD04G1008500 Annotation

Gene ID	Annotation
MD04G1008500	Calcium-binding EF-hand family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0241	intracellular protein transport COPII vesicle coat myosin complex leaf pavement cell development mitochondrion localization peroxisome localization retrograde transport Golgi localization protein N-linked glycosylation gynoecium development cytosol membrane coat exocyst ER body organization actin filament-based movement motor activity clathrin binding vesicle-mediated transport sugar mediated signaling pathway

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1008500	mRNA	Chr04	978810	981848	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G24110.1	1	Calcium-binding EF-hand family protein
Prunus persica	Prupe.1G007100.1.p	1	Calcium-binding EF-hand family protein
Pyrus x bretschneideri	Pbr030939.1	1	-
Rosa multiflora	Rmu_sc0013726.1_g000002.1	1	-
Rubus occidentalis	Ro04_G26849	1	-
Fragaria vesca	mrna09782.1	1	Calcium-binding EF-hand family protein
Vitis vinifera	GSVIVT01021071001	1	Calcium-binding EF-hand family protein
Solanum lycopersicum	Solyc09g092020.2.1	1	Calcium-binding EF-hand family protein
Populus trichocarpa	Potri.001G314900.1	1	Calcium-binding EF-hand family protein
Nicotiana benthamiana	Niben101Scf01333g00005.1	1	calcium ion binding protein [Oryza alta]

Gene Ontology

GO term	Description	Category
GO:0005509	calcium ion binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13833.2	EF-hand_8	93	141	5.30E-11
PF13499.2	EF-hand_7	173	232	2.70E-10

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	9.67888
SRR5252888	dormant buds	no	dormant buds(0 month)	3.54564
SRR5252889	dormant buds	no	dormant buds(0 month)	2.13929
SRR5252886	dormant buds	no	dormant buds(1 months)	7.50672
SRR5252887	dormant buds	no	dormant buds(1 months)	3.59018
SRR5252884	dormant buds	no	dormant buds(2 months)	5.57425
SRR5252882	dormant buds	no	dormant buds(3 months)	6.38934
SRR5252883	dormant buds	no	dormant buds(3 months)	4.43845
SRR5252880	dormant buds	no	dormant buds(4 months)	7.01426
SRR5252881	dormant buds	no	dormant buds(4 months)	5.04291
SRR5252878	bud break	no	bud break	7.46276
SRR5252879	bud break	no	bud break	12.0609
SRR3744766	flower	no	mature	9.77763
SRR3744767	flower	no	mature	8.72038
SRR3744768	flower	no	mature	9.25419
SRR6308190	stigmas	no	open flowers	5.28716
SRR6308181	styles	no	open flowers	8.75797
SRR6308188	filaments	no	open flowers	2.60394
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.68051
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	5.97152
SRR6308194	sepals	no	open flowers	5.65365
SRR6308193	receptacles	no	open flowers	8.47987
SRR6308189	ovaries	no	open flowers	9.15491
SRR3384922	fruit	no	1 week after full bloom	9.79571
SRR3384921	fruit	no	2 week after full bloom	17.8879
SRR3384920	fruit	no	3 week after full bloom	10.1203
SRR3384919	fruit	no	4 week after full bloom	10.1398
SRR3384923	fruit	no	5 week after full bloom	9.26715
SRR3384918	fruit	no	6 week after full bloom	12.268
SRR3384917	fruit	no	8 week after full bloom	10.3654
SRR3384916	fruit	no	10 week after full bloom	6.47131
SRR3384915	fruit	no	12 week after full bloom	6.41932
SRR3384914	fruit	no	14 week after full bloom	7.576
SRR3384913	fruit	no	16 week after full bloom	4.59416
SRR3384912	fruit	no	18 week after full bloom	3.15062
SRR3384911	fruit	no	19 week after full bloom	2.46517
SRR3384910	fruit	no	20 week after full bloom	0.747157
SRR768128	whole fruit	no	25 days post anthesis	9.79237
SRR768129	whole fruit	no	35 days post anthesis	13.8118
SRR768130	whole fruit	no	60 days post anthesis	7.77407
SRR768131	whole fruit	no	87 days post anthesis	5.97611
SRR7343308	immature fruit flesh	no	immature	9.28358
SRR7343309	immature fruit flesh	no	immature	11.0341
SRR6320494	ripe fruit flesh	no	mature	1.26301
SRR5405143	ripe fruit peel	no	mature	0.494773
SRR6320572	ripe fruit peel	no	mature	0.363224
SRR7403504	fruit	uninfected	mature	0.829293
SRR7403506	fruit	uninfected	mature	1.31404
SRR7403507	fruit	uninfected	mature	0.7801
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.636137
SRR7403508	fruit	infected with penicillium expansum	mature	0.114646
SRR7403502	fruit	infected with penicillium expansum	mature	0.177277
SRR7403503	fruit	infected with penicillium expansum	mature	0.099002
SRR7403505	fruit	infected with penicillium expansum	mature	0.0889909
SRR1613973	Central seeds	no	20DAPF	18.5537
SRR1613974	Central seeds	no	20DAPF	23.5679
SRR1613975	Central seeds	no	20DAPF	19.9411
SRR1613976	Lateral seeds	no	20DAPF	23.2127
SRR1613977	Lateral seeds	no	20DAPF	22.3511
SRR1613978	Lateral seeds	no	20DAPF	21.9265
SRR3744786	stem	no	mature	5.27324
SRR3744787	stem	no	mature	6.59316
SRR3744772	stem	no	mature	6.91823
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.49315
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	4.73462
SRR1089478	leaf	Virus-free	plantlets	6.73447
SRR1089477	leaf	ASGV-infected	plantlets	8.2248
SRR767660	leaf	uninfected	fully developed	7.84483
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	15.9267
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	7.53559
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.63087
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	7.54388
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.876036
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	7.22506
SRR6308182	young leaf	no	immature leaves	12.3472
SRR3744769	leaf	no	mature	6.86776
SRR3744770	leaf	no	mature	6.72958
SRR3744771	leaf	no	mature	6.56222
SRR5405145	leaf	no	mature	5.36702
SRR6320561	leaf	no	mature	6.3675