Gene detail

Detail information of MD04G1011900 Annotation

Gene ID	Annotation
MD04G1011900	GTP binding Elongation factor Tu family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0337	plasmodesma elongation factor 1-alpha translation elongation factor activity translational elongation translation vacuole structural constituent of ribosome cytosolic large ribosomal subunit GTPase activity rRNA (adenine-N6 rRNA modification large subunit ribosomal protein L17e large subunit ribosomal protein L10Ae 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase [EC:2.1.1.183] small subunit ribosomal protein S5e calmodulin binding GTP binding nucleolus RNA binding cell fate specification

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1011900	mRNA	Chr04	1342274	1345372	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP019195.1	1	-
Vitis vinifera	GSVIVT01014488001	1	GTP binding Elongation factor Tu family protein

Gene Ontology

GO term	Description	Category
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function

KEGG

KO	Description	Enzyme
K03231	elongation factor 1-alpha	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.23	GTP_EFTU	7	180	9.30E-50

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	292.91
SRR5252888	dormant buds	no	dormant buds(0 month)	568.472
SRR5252889	dormant buds	no	dormant buds(0 month)	349.023
SRR5252886	dormant buds	no	dormant buds(1 months)	478.861
SRR5252887	dormant buds	no	dormant buds(1 months)	501.554
SRR5252884	dormant buds	no	dormant buds(2 months)	829.832
SRR5252882	dormant buds	no	dormant buds(3 months)	632.219
SRR5252883	dormant buds	no	dormant buds(3 months)	680.095
SRR5252880	dormant buds	no	dormant buds(4 months)	1027.17
SRR5252881	dormant buds	no	dormant buds(4 months)	702.234
SRR5252878	bud break	no	bud break	563.815
SRR5252879	bud break	no	bud break	570.165
SRR3744766	flower	no	mature	118.945
SRR3744767	flower	no	mature	110.904
SRR3744768	flower	no	mature	118.597
SRR6308190	stigmas	no	open flowers	95.5752
SRR6308181	styles	no	open flowers	154.735
SRR6308188	filaments	no	open flowers	491.312
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	122.611
SRR6308192	pollen	no	open flowers	42.0563
SRR6308191	petals	no	open flowers	378.235
SRR6308194	sepals	no	open flowers	307.706
SRR6308193	receptacles	no	open flowers	421.037
SRR6308189	ovaries	no	open flowers	237.305
SRR3384922	fruit	no	1 week after full bloom	156.18
SRR3384921	fruit	no	2 week after full bloom	139.723
SRR3384920	fruit	no	3 week after full bloom	65.6801
SRR3384919	fruit	no	4 week after full bloom	111.351
SRR3384923	fruit	no	5 week after full bloom	67.0988
SRR3384918	fruit	no	6 week after full bloom	67.9044
SRR3384917	fruit	no	8 week after full bloom	82.9388
SRR3384916	fruit	no	10 week after full bloom	39.8629
SRR3384915	fruit	no	12 week after full bloom	18.3839
SRR3384914	fruit	no	14 week after full bloom	45.7436
SRR3384913	fruit	no	16 week after full bloom	69.0262
SRR3384912	fruit	no	18 week after full bloom	48.462
SRR3384911	fruit	no	19 week after full bloom	85.9894
SRR3384910	fruit	no	20 week after full bloom	110.393
SRR768128	whole fruit	no	25 days post anthesis	131.907
SRR768129	whole fruit	no	35 days post anthesis	234.669
SRR768130	whole fruit	no	60 days post anthesis	129.44
SRR768131	whole fruit	no	87 days post anthesis	229.588
SRR7343308	immature fruit flesh	no	immature	296.107
SRR7343309	immature fruit flesh	no	immature	297.848
SRR6320494	ripe fruit flesh	no	mature	47.8186
SRR5405143	ripe fruit peel	no	mature	151.454
SRR6320572	ripe fruit peel	no	mature	194.071
SRR7403504	fruit	uninfected	mature	105.228
SRR7403506	fruit	uninfected	mature	114.133
SRR7403507	fruit	uninfected	mature	111.095
SRR7403500	fruit	infected with penicillium expansum	mature	168.421
SRR7403501	fruit	infected with penicillium expansum	mature	170.324
SRR7403508	fruit	infected with penicillium expansum	mature	158.82
SRR7403502	fruit	infected with penicillium expansum	mature	175.76
SRR7403503	fruit	infected with penicillium expansum	mature	172.107
SRR7403505	fruit	infected with penicillium expansum	mature	176.977
SRR1613973	Central seeds	no	20DAPF	846.232
SRR1613974	Central seeds	no	20DAPF	796.041
SRR1613975	Central seeds	no	20DAPF	798.603
SRR1613976	Lateral seeds	no	20DAPF	600.239
SRR1613977	Lateral seeds	no	20DAPF	672.387
SRR1613978	Lateral seeds	no	20DAPF	727.575
SRR3744786	stem	no	mature	112.482
SRR3744787	stem	no	mature	106.14
SRR3744772	stem	no	mature	110.53
SRX765691	seedling shoot apex	no	4-6 week old seedling	349.347
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	235.428
SRR1089478	leaf	Virus-free	plantlets	237.151
SRR1089477	leaf	ASGV-infected	plantlets	220.189
SRR767660	leaf	uninfected	fully developed	295.5
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	267.221
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	313.549
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	325.54
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	142.016
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	94.8765
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	285.493
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	214.208
SRR6308182	young leaf	no	immature leaves	576.284
SRR3744769	leaf	no	mature	99.1497
SRR3744770	leaf	no	mature	99.0202
SRR3744771	leaf	no	mature	100.678
SRR5405145	leaf	no	mature	142.828
SRR6320561	leaf	no	mature	117.531