| Gene ID | Annotation |
|---|---|
| MD04G1023600 | DNA topoisomerase |
| Network Category | Global Network | Conditional network (different tissues and developmental stages) |
|---|---|---|
| Coexpression Positive | Top300 PCC genelist | Top300 PCC genelist |
| Coexpression Negative | Top300 PCC genelist | Top300 PCC genelist |
| Method | Module ID | Function Annotation |
|---|---|---|
| Co-expression network | CFinderM0213 | E3 ubiquitin-protein ligase UBR7 [EC:2.3.2.27] UBR-box U11/U12 small nuclear ribonucleoprotein 65 kDa protein DNA topoisomerase III [EC:5.99.1.2] RNA polymerase-associated protein LEO1 serine/threonine kinase 19 [EC:2.7.11.1] protein phosphatase 4 regulatory subunit 3 chromodomain-helicase-DNA-binding protein 1-like [EC:3.6.4.12] |
| more details in UCSC | details of chromatin state |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| MD04G1023600 | mRNA | Chr04 | 2711302 | 2721667 | + |
| CDS: |
| MD04G1023600 |
| Protein: |
| MD04G1023600 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| Species | Gene ID | Score of Inparanoid | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G32000.1 | 1 | "DNA topoisomerase, type IA, core" |
| Arabidopsis thaliana | AT2G32000.2 | 0.695 | "DNA topoisomerase, type IA, core" |
| Prunus persica | Prupe.1G173400.1.p | 1 | "DNA topoisomerase, type IA, core" |
| Pyrus communis | PCP013717.1 | 1 | - |
| Pyrus x bretschneideri | Pbr013793.1 | 1 | - |
| Rosa multiflora | Rmu_sc0000711.1_g000051.1 | 1 | - |
| Rubus occidentalis | Ro04_G15393 | 1 | - |
| Fragaria vesca | mrna16875.1 | 1 | "DNA topoisomerase, type IA, core" |
| Vitis vinifera | GSVIVT01031636001 | 1 | "DNA topoisomerase, type IA, core" |
| Populus trichocarpa | Potri.014G148800.1 | 1 | "DNA topoisomerase, type IA, core" |
| Nicotiana benthamiana | Niben101Scf06525g00025.1 | 1 | DNA topoisomerase 3 |
| Oryza sativa | LOC_Os09g32450.1 | 1 | "DNA topoisomerase 3 protein, putative, expressed" |
| GO term | Description | Category |
|---|---|---|
| GO:0003917 | DNA topoisomerase type I activity | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0006265 | DNA topological change | biological_process |
| KO | Description | Enzyme |
|---|---|---|
| K03165 | DNA topoisomerase III | EC:5.99.1.2 |
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
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