Gene detail

Detail information of MD04G1033100 Annotation

Gene ID	Annotation
MD04G1033100	ribosomal protein 5B

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0576	structural constituent of ribosome translation cytosolic small ribosomal subunit RNA methylation cytosolic large ribosomal subunit small subunit ribosomal protein S5e large subunit ribosomal protein L13e small subunit ribosomal protein SAe small subunit ribosomal protein S4e large subunit ribosomal protein L13Ae endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA ribosomal small subunit assembly rRNA export from nucleus 90S preribosome cell division protease FtsH [EC:3.4.24.-] nucleolus

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1033100	mRNA	Chr04	3749831	3752305	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G37270.2	1	ATRPS5B;RPS5B\|ribosomal protein 5B
Arabidopsis thaliana	AT2G37270.1	1	ATRPS5B;RPS5B\|ribosomal protein 5B
Arabidopsis thaliana	AT3G11940.1	0.659	AML1;ATRPS5A;RPS5A\|ARABIDOPSIS MINUTE-LIKE 1;ribosomal protein 5A
Arabidopsis thaliana	AT3G11940.2	0.659	AML1;ATRPS5A;RPS5A\|ARABIDOPSIS MINUTE-LIKE 1;ribosomal protein 5A
Prunus persica	Prupe.1G502000.1.p	1	ribosomal protein 5B
Pyrus communis	PCP028904.1	1	-
Pyrus x bretschneideri	Pbr031106.1	1	-
Rosa multiflora	Rmu_sc0007232.1_g000007.1	1	-
Rubus occidentalis	Ro06_G22919	1	-
Rubus occidentalis	Ro02_G35026	1	-
Vitis vinifera	GSVIVT01026328001	1	ribosomal protein 5B
Vitis vinifera	GSVIVT01033419001	1	ribosomal protein 5B
Populus trichocarpa	Potri.006G197700.1	1	ribosomal protein 5B
Populus trichocarpa	Potri.016G063200.2	1	ribosomal protein 5B
Nicotiana benthamiana	Niben101Scf04288g01012.1	1	30S ribosomal protein S7
Nicotiana benthamiana	Niben101Scf00749g04008.1	0.969	30S ribosomal protein S7
Oryza sativa	LOC_Os01g01060.1	1	"40S ribosomal protein S5, putative, expressed"
Oryza sativa	LOC_Os04g16798.1	1	"chloroplast 30S ribosomal protein S7, putative, expressed"
Oryza sativa	LOC_Os04g16886.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os04g16712.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os04g16856.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os08g15246.1	1	"chloroplast 30S ribosomal protein S7, putative"
Oryza sativa	LOC_Os07g25002.1	1	"chloroplast 30S ribosomal protein S7, putative, expressed"
Oryza sativa	LOC_Os10g21372.1	1	"chloroplast 30S ribosomal protein S7, putative"
Zea mays	GRMZM2G078985_P01	1	40S ribosomal protein S5;

Gene Ontology

GO term	Description	Category
GO:0015935	small ribosomal subunit	cellular component
GO:0003735	structural constituent of ribosome	molecular_function
GO:0003723	RNA binding	molecular_function
GO:0006412	translation	biological_process

KEGG

KO	Description	Enzyme
K02989	small subunit ribosomal protein S5e	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00177.17	Ribosomal_S7	64	209	1.90E-36

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	74.1081
SRR5252888	dormant buds	no	dormant buds(0 month)	28.4043
SRR5252889	dormant buds	no	dormant buds(0 month)	24.6995
SRR5252886	dormant buds	no	dormant buds(1 months)	22.5857
SRR5252887	dormant buds	no	dormant buds(1 months)	16.1979
SRR5252884	dormant buds	no	dormant buds(2 months)	19.6348
SRR5252882	dormant buds	no	dormant buds(3 months)	34.8528
SRR5252883	dormant buds	no	dormant buds(3 months)	24.6943
SRR5252880	dormant buds	no	dormant buds(4 months)	40.8666
SRR5252881	dormant buds	no	dormant buds(4 months)	39.2141
SRR5252878	bud break	no	bud break	32.1595
SRR5252879	bud break	no	bud break	85.9664
SRR3744766	flower	no	mature	14.3741
SRR3744767	flower	no	mature	13.0343
SRR3744768	flower	no	mature	11.3787
SRR6308190	stigmas	no	open flowers	7.76399
SRR6308181	styles	no	open flowers	13.9734
SRR6308188	filaments	no	open flowers	30.9068
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	9.1853
SRR6308192	pollen	no	open flowers	23.3917
SRR6308191	petals	no	open flowers	32.766
SRR6308194	sepals	no	open flowers	23.0623
SRR6308193	receptacles	no	open flowers	36.2552
SRR6308189	ovaries	no	open flowers	22.365
SRR3384922	fruit	no	1 week after full bloom	64.6772
SRR3384921	fruit	no	2 week after full bloom	54.4867
SRR3384920	fruit	no	3 week after full bloom	56.205
SRR3384919	fruit	no	4 week after full bloom	44.5809
SRR3384923	fruit	no	5 week after full bloom	35.1054
SRR3384918	fruit	no	6 week after full bloom	38.8067
SRR3384917	fruit	no	8 week after full bloom	38.0077
SRR3384916	fruit	no	10 week after full bloom	41.5724
SRR3384915	fruit	no	12 week after full bloom	56.9824
SRR3384914	fruit	no	14 week after full bloom	46.531
SRR3384913	fruit	no	16 week after full bloom	33.2811
SRR3384912	fruit	no	18 week after full bloom	36.8301
SRR3384911	fruit	no	19 week after full bloom	26.9213
SRR3384910	fruit	no	20 week after full bloom	22.5407
SRR768128	whole fruit	no	25 days post anthesis	64.0887
SRR768129	whole fruit	no	35 days post anthesis	53.0014
SRR768130	whole fruit	no	60 days post anthesis	28.6494
SRR768131	whole fruit	no	87 days post anthesis	22.6612
SRR7343308	immature fruit flesh	no	immature	20.7611
SRR7343309	immature fruit flesh	no	immature	32.8176
SRR6320494	ripe fruit flesh	no	mature	18.1297
SRR5405143	ripe fruit peel	no	mature	23.9577
SRR6320572	ripe fruit peel	no	mature	28.0941
SRR7403504	fruit	uninfected	mature	20.9365
SRR7403506	fruit	uninfected	mature	18.816
SRR7403507	fruit	uninfected	mature	19.949
SRR7403500	fruit	infected with penicillium expansum	mature	30.2017
SRR7403501	fruit	infected with penicillium expansum	mature	27.2336
SRR7403508	fruit	infected with penicillium expansum	mature	30.2901
SRR7403502	fruit	infected with penicillium expansum	mature	29.9238
SRR7403503	fruit	infected with penicillium expansum	mature	30.0318
SRR7403505	fruit	infected with penicillium expansum	mature	28.1271
SRR1613973	Central seeds	no	20DAPF	53.8637
SRR1613974	Central seeds	no	20DAPF	47.4761
SRR1613975	Central seeds	no	20DAPF	54.8101
SRR1613976	Lateral seeds	no	20DAPF	41.5257
SRR1613977	Lateral seeds	no	20DAPF	49.4493
SRR1613978	Lateral seeds	no	20DAPF	45.5166
SRR3744786	stem	no	mature	10.0411
SRR3744787	stem	no	mature	9.70353
SRR3744772	stem	no	mature	8.9077
SRX765691	seedling shoot apex	no	4-6 week old seedling	46.352
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	57.1737
SRR1089478	leaf	Virus-free	plantlets	15.9862
SRR1089477	leaf	ASGV-infected	plantlets	21.211
SRR767660	leaf	uninfected	fully developed	38.8151
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	27.1771
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	42.8281
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	45.9238
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	25.6607
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	22.5116
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	19.0375
SRR6308182	young leaf	no	immature leaves	59.5591
SRR3744769	leaf	no	mature	10.3858
SRR3744770	leaf	no	mature	9.39391
SRR3744771	leaf	no	mature	11.4248
SRR5405145	leaf	no	mature	8.75299
SRR6320561	leaf	no	mature	18.3318