Gene detail

Detail information of MD04G1040300 Annotation

Gene ID	Annotation
MD04G1040300	enzyme binding

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0848	tetrapyrrole binding oxidoreductase activity acetyltransferase activity 2-methyl-6-phytyl-1 enzyme binding pentose-phosphate shunt speckle-type POZ protein small subunit ribosomal protein S9

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1040300	mRNA	Chr04	4710689	4711480	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G59400.1	1	GUN4\|GENOMES UNCOUPLED 4
Prunus persica	Prupe.1G193000.1.p	1	enzyme binding;tetrapyrrole binding
Pyrus x bretschneideri	Pbr002705.1	1	-
Rosa multiflora	Rmu_sc0006408.1_g000008.1	1	-
Fragaria vesca	mrna21680.1	1	enzyme binding;tetrapyrrole binding
Vitis vinifera	GSVIVT01010754001	1	enzyme binding;tetrapyrrole binding
Solanum lycopersicum	Solyc06g073290.1.1	1	enzyme binding;tetrapyrrole binding
Populus trichocarpa	Potri.017G030100.1	1	enzyme binding;tetrapyrrole binding
Populus trichocarpa	Potri.007G128200.1	0.6	enzyme binding;tetrapyrrole binding
Nicotiana benthamiana	Niben101Scf00078g02007.1	1	GUN4 protein [N [Nostoc sp. PCC 7524]
Nicotiana benthamiana	Niben101Scf03113g03014.1	0.93	GUN4 protein [N [Nostoc sp. PCC 7524]
Oryza sativa	LOC_Os11g16550.1	1	"uncharacterized protein ycf53, putative, expressed"
Zea mays	GRMZM2G464328_P01	1	enzyme binding;tetrapyrrole binding

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05419.8	GUN4	69	217	4.70E-48

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	83.8745
SRR5252888	dormant buds	no	dormant buds(0 month)	7.27852
SRR5252889	dormant buds	no	dormant buds(0 month)	7.39629
SRR5252886	dormant buds	no	dormant buds(1 months)	10.3814
SRR5252887	dormant buds	no	dormant buds(1 months)	3.96511
SRR5252884	dormant buds	no	dormant buds(2 months)	2.75317
SRR5252882	dormant buds	no	dormant buds(3 months)	5.24643
SRR5252883	dormant buds	no	dormant buds(3 months)	3.15933
SRR5252880	dormant buds	no	dormant buds(4 months)	11.5743
SRR5252881	dormant buds	no	dormant buds(4 months)	5.04702
SRR5252878	bud break	no	bud break	40.898
SRR5252879	bud break	no	bud break	43.5253
SRR3744766	flower	no	mature	14.5968
SRR3744767	flower	no	mature	13.8564
SRR3744768	flower	no	mature	14.2681
SRR6308190	stigmas	no	open flowers	37.8301
SRR6308181	styles	no	open flowers	25.2577
SRR6308188	filaments	no	open flowers	7.20002
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	4.47343
SRR6308194	sepals	no	open flowers	16.2091
SRR6308193	receptacles	no	open flowers	20.3837
SRR6308189	ovaries	no	open flowers	28.9416
SRR3384922	fruit	no	1 week after full bloom	35.9431
SRR3384921	fruit	no	2 week after full bloom	70.5349
SRR3384920	fruit	no	3 week after full bloom	117.19
SRR3384919	fruit	no	4 week after full bloom	94.7191
SRR3384923	fruit	no	5 week after full bloom	124.614
SRR3384918	fruit	no	6 week after full bloom	98.2255
SRR3384917	fruit	no	8 week after full bloom	115.538
SRR3384916	fruit	no	10 week after full bloom	173.828
SRR3384915	fruit	no	12 week after full bloom	145.093
SRR3384914	fruit	no	14 week after full bloom	126.583
SRR3384913	fruit	no	16 week after full bloom	57.2849
SRR3384912	fruit	no	18 week after full bloom	51.6085
SRR3384911	fruit	no	19 week after full bloom	33.1366
SRR3384910	fruit	no	20 week after full bloom	8.18184
SRR768128	whole fruit	no	25 days post anthesis	35.4124
SRR768129	whole fruit	no	35 days post anthesis	64.7003
SRR768130	whole fruit	no	60 days post anthesis	98.5111
SRR768131	whole fruit	no	87 days post anthesis	45.2187
SRR7343308	immature fruit flesh	no	immature	9.18852
SRR7343309	immature fruit flesh	no	immature	18.3709
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.862284
SRR6320572	ripe fruit peel	no	mature	0.614647
SRR7403504	fruit	uninfected	mature	2.42976
SRR7403506	fruit	uninfected	mature	3.01963
SRR7403507	fruit	uninfected	mature	2.24081
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.197591
SRR7403502	fruit	infected with penicillium expansum	mature	0.152766
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.153374
SRR1613973	Central seeds	no	20DAPF	4.27555
SRR1613974	Central seeds	no	20DAPF	3.35703
SRR1613975	Central seeds	no	20DAPF	4.30845
SRR1613976	Lateral seeds	no	20DAPF	2.75286
SRR1613977	Lateral seeds	no	20DAPF	2.0861
SRR1613978	Lateral seeds	no	20DAPF	1.46376
SRR3744786	stem	no	mature	4.59894
SRR3744787	stem	no	mature	4.92247
SRR3744772	stem	no	mature	4.96981
SRX765691	seedling shoot apex	no	4-6 week old seedling	24.9279
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	31.3641
SRR1089478	leaf	Virus-free	plantlets	220.776
SRR1089477	leaf	ASGV-infected	plantlets	260.695
SRR767660	leaf	uninfected	fully developed	289.82
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	495.054
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	277.973
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	125.505
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	179.116
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	221.512
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	172.369
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	195.659
SRR6308182	young leaf	no	immature leaves	25.9614
SRR3744769	leaf	no	mature	72.2364
SRR3744770	leaf	no	mature	74.7487
SRR3744771	leaf	no	mature	74.739
SRR5405145	leaf	no	mature	260.789
SRR6320561	leaf	no	mature	143.056