Gene detail

Detail information of MD04G1050400 Annotation

Gene ID	Annotation
MD04G1050400	RAB GTPase homolog 1C

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1050400	mRNA	Chr04	5925698	5927942	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G17530.1	1	ATRAB1C;ATRABD2C;RAB1C;RAB1C\|RAB GTPase homolog 1C;
Arabidopsis thaliana	AT5G47200.1	1	ATRAB1A;ATRABD2B;RAB1A\|RAB GTPase homolog 1A;ARABIDOPSIS RAB GTPASE HOMOLOG D2B
Rubus occidentalis	Ro05_G11803	1	-
Vitis vinifera	GSVIVT01013868001	1	RAB GTPase homolog 1C
Solanum lycopersicum	Solyc08g078070.2.1	1	RAS 5
Populus trichocarpa	Potri.003G081800.1	1	RAS 5
Nicotiana benthamiana	Niben101Scf06078g02029.1	1	Ras-related protein Rab-13
Nicotiana benthamiana	Niben101Scf08179g02014.1	1	Ras-related protein Rab-8A
Nicotiana benthamiana	Niben101Scf00428g12008.1	0.95	Ras-related protein Rab-8
Oryza sativa	LOC_Os01g08450.1	1	"ras-related protein, putative, expressed"
Zea mays	GRMZM2G097746_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0006886	intracellular protein transport	biological_process
GO:0016020	membrane	cellular component
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0006913	nucleocytoplasmic transport	biological_process
GO:0006184	obsolete GTP catabolic process	biological_process
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K07874	Ras-related protein Rab-1A	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.18	Ras	10	170	2.70E-67

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	52.1021
SRR5252888	dormant buds	no	dormant buds(0 month)	18.648
SRR5252889	dormant buds	no	dormant buds(0 month)	19.2024
SRR5252886	dormant buds	no	dormant buds(1 months)	36.8489
SRR5252887	dormant buds	no	dormant buds(1 months)	49.7071
SRR5252884	dormant buds	no	dormant buds(2 months)	28.8663
SRR5252882	dormant buds	no	dormant buds(3 months)	27.228
SRR5252883	dormant buds	no	dormant buds(3 months)	26.7589
SRR5252880	dormant buds	no	dormant buds(4 months)	19.7784
SRR5252881	dormant buds	no	dormant buds(4 months)	16.3217
SRR5252878	bud break	no	bud break	28.6076
SRR5252879	bud break	no	bud break	31.4378
SRR3744766	flower	no	mature	132.388
SRR3744767	flower	no	mature	136.567
SRR3744768	flower	no	mature	137.796
SRR6308190	stigmas	no	open flowers	133.918
SRR6308181	styles	no	open flowers	140.589
SRR6308188	filaments	no	open flowers	133.561
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	222.891
SRR6308192	pollen	no	open flowers	285.226
SRR6308191	petals	no	open flowers	171.782
SRR6308194	sepals	no	open flowers	145.793
SRR6308193	receptacles	no	open flowers	100.537
SRR6308189	ovaries	no	open flowers	121.166
SRR3384922	fruit	no	1 week after full bloom	133.759
SRR3384921	fruit	no	2 week after full bloom	125.661
SRR3384920	fruit	no	3 week after full bloom	114.876
SRR3384919	fruit	no	4 week after full bloom	122.325
SRR3384923	fruit	no	5 week after full bloom	123.626
SRR3384918	fruit	no	6 week after full bloom	157.85
SRR3384917	fruit	no	8 week after full bloom	128.008
SRR3384916	fruit	no	10 week after full bloom	128.775
SRR3384915	fruit	no	12 week after full bloom	133.59
SRR3384914	fruit	no	14 week after full bloom	122.928
SRR3384913	fruit	no	16 week after full bloom	144.788
SRR3384912	fruit	no	18 week after full bloom	139.096
SRR3384911	fruit	no	19 week after full bloom	139.759
SRR3384910	fruit	no	20 week after full bloom	139.32
SRR768128	whole fruit	no	25 days post anthesis	76.9208
SRR768129	whole fruit	no	35 days post anthesis	166.707
SRR768130	whole fruit	no	60 days post anthesis	110.587
SRR768131	whole fruit	no	87 days post anthesis	111.702
SRR7343308	immature fruit flesh	no	immature	65.354
SRR7343309	immature fruit flesh	no	immature	63.3524
SRR6320494	ripe fruit flesh	no	mature	85.7598
SRR5405143	ripe fruit peel	no	mature	94.2962
SRR6320572	ripe fruit peel	no	mature	47.6963
SRR7403504	fruit	uninfected	mature	118.15
SRR7403506	fruit	uninfected	mature	112.195
SRR7403507	fruit	uninfected	mature	109.879
SRR7403500	fruit	infected with penicillium expansum	mature	255.664
SRR7403501	fruit	infected with penicillium expansum	mature	255.22
SRR7403508	fruit	infected with penicillium expansum	mature	269.797
SRR7403502	fruit	infected with penicillium expansum	mature	217.005
SRR7403503	fruit	infected with penicillium expansum	mature	205.54
SRR7403505	fruit	infected with penicillium expansum	mature	214.412
SRR1613973	Central seeds	no	20DAPF	106.071
SRR1613974	Central seeds	no	20DAPF	105.331
SRR1613975	Central seeds	no	20DAPF	111.821
SRR1613976	Lateral seeds	no	20DAPF	116.468
SRR1613977	Lateral seeds	no	20DAPF	122.028
SRR1613978	Lateral seeds	no	20DAPF	128.695
SRR3744786	stem	no	mature	60.1776
SRR3744787	stem	no	mature	63.8072
SRR3744772	stem	no	mature	59.3785
SRX765691	seedling shoot apex	no	4-6 week old seedling	73.123
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	74.0416
SRR1089478	leaf	Virus-free	plantlets	64.5643
SRR1089477	leaf	ASGV-infected	plantlets	54.0357
SRR767660	leaf	uninfected	fully developed	38.9894
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	20.5707
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	36.9639
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	64.741
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	45.7108
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	32.3109
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	48.9235
SRR6308182	young leaf	no	immature leaves	105.655
SRR3744769	leaf	no	mature	59.8885
SRR3744770	leaf	no	mature	61.2014
SRR3744771	leaf	no	mature	61.8073
SRR5405145	leaf	no	mature	50.1662
SRR6320561	leaf	no	mature	54.471