Gene detail

Detail information of MD04G1053800 Annotation

Gene ID	Annotation
MD04G1053800	chromatin remodeling 31

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1053800	mRNA	Chr04	6395038	6400327	+

Sequences

CDS:

MD04G1053800

ATGAGTTCAAATTTTGGGGGAAAAAGTTTGGATCTTTGTGGTTATAATCCGAATTTCTGTAAATCTTGCGTCTTTGGTGAAAAAGTTTGGATCTTTGGGGCTAATAACTTAAAGCTTGCTTCTTTTTTATTCACTCAAAATCTTTCCTTTTCTGTTTCTGCAGAAAAAGGTGGAAACTTTGGACTTGTTAGGATGGACTACAGCTTGCCAGTAGCAAAGAGAACCAGGCGGGGCCAAGAGTTGTACTGGAAGGAGTTTTATGAGAACTGGAAGAAGAATCGTAGGGGTGACAAGGTCAGTGTGAGTCACCCCGAAAGATATGTGAAAGAAAAGAATGCCCAGAGACAAAAATCCATTCATGGCTCCAAGAAATCGTCGCCTGGAAGTTCAGTGGAGTACACGTATGTACATGATTCTGATGAAAGTGAGGAGGAGGCTAGAGCCTATGCATCACTGGATGTTTCTGATGAGGCTGAGGAGGCCAATGCAAAGCCACCCACAAGAAGTAAACACAATAAAAGGCTTGGGAAGCGAAATTCCAGCAACGGGTCTAAGAAGTGCAGGTCCGGTTGTTCTATAAAATCCGAGTCTATAGAGGTTTCTGATCATGGTGAGAAGACCACTGCAGGTCCTTCCACAGGAGCTAAAACATGCCAAAAAATGCTTGGGAAACAAAAATCCAGTAGCGGGTCTAAGATATGGAGGTCCAGATGTTCATTGAACTTTGAGTCCATAGATGATTCTGACGATGGTGAGGAGGCCGCTGCAGCTCCCTCTAGAGGAGCTAAACGCGAAAAAAAGGTTGGGAAACGAAAATCCTCTGGAGGGTCTAGGAAACGGAGGTCTGGTTGTTCAATGGATTTTGAGTCTATAGATGTGTCTGATGGTGGTGAAGTTCCCAGTGTTGAAATCATTGGTGAAGATTCATGTGGAGAAAATGATAATGATGGAATGGATTCTATTGATATACAGAGTGCAGGATCAAAGAATGGAAAAACATCTGAATGTGGTCCACTTGATTTGGAGGATAGTGATTCTGATGTGGTGTATTTAGGTGAAGAAGGAGTTGGAGAAGGAGGAGGAGGAGGAGGAGATTTTGTTTCTGATAGCTCATATGAAACAGATACCCTCCTGTCTAGTGAAGAGGAAAGCGCTCATTCGGATGATGAGGATTATGACCCAGAAGAGTCAGAAAGTTCTGAGTTTTCTAAGGAGTCGAGTTCTTCTGGCGGAGACAGCCAACAGAGCGATGAAAGTGATGGTGAGGTGAATATCCAAAGAACTGATAAAAGGGATGCTAAGGTGAAGAAACTGGAGAATGTAAATGAAAGGGAGCGAAAAAAGGGAAGCAGGAAAGCCAGAAAGCGGGAAAGTGTAGAGGATAATGTTGAGGTGATAAAGGTGCACAATATTGATGGAAGGGAGGTTAAAAAGGGAAGTCACAAAGAGGGAAAGGGAAAAAGTGTTAAGGGTGGTGTTGAGGTGAAGAAGTGGCAGCATGTTGGGAAACAGGAGAATAAAGGGCATATGGAGAAGCTTACGAACAGACAGTCCATGTGGGAAACCAAACACTGCAATGTTTTAAATGTTCTTGTGGATTCCATCTATGAGAAGGAAGAAGTGCTACAGGAAGGGTCAGATACACTTGGGAATGAAGCTTTGAAAGATGAAAGAAATCCACCAGTAGCTCAAGTTACCACTCTTCCACTGAAGTTTACTTTTGGATCTACATCTACGCAGCCAAGTGTACCAAAGAAGCAAGAAATGGATCCAGAAGAAAAAGAACTTTGGGATTACCTTGACTTTGATCTCAAATCTTGTGAAATTGGTTCCACTGAATCACATGAGGTTGAGAATCAAGATCCACTCCCCACTGTTTGTGAAGAGAATGCAGCTGCCCTTTGTAAGCGAGGGATTCATCAGCTTATGCTTGATGAAGAGATTGGAAGCAGATGCAGATTTTGCTCTTACTTAGATCAGGAGATCAAGTATATTGTACCAGAATTTGTTAAGTACCCTTGCGAAAGATTTGGTGCAAGAGTCTATGAACCAGACAACCCATCTATCTTTGATGAGCTTCAATCTCTTGACTATGGTTCCGATCCCCATTCTGGCTGCAGTTCTCACGTTCATGCTGAAGGCACAGTGTGGGACTTCATTCCAGGTGTTCAAAGCAGTATGTATTCTCATCAGCGTGAAGGCTTTGAATTCATCTGGAATCATATAGCTGGTGGAATACATGTTGAGGAGCTGAAAAGAAGAAGCAGTGATTATTCTGGGAATGGATGCATAATTTCACACGCTCCTGGAACTGGAAAGACACGGCTAACCATTGTCTTTCTCCAGACATACCTGAAGTTGTTTCCAAAGTGCAGGCCACTTTTGATAGCTCCTCGCAGCATGCTGCTAACTTGGGAAGAGGAGTTCAAAAAATGGGAGTTTGACATTCCTTTTCACAATCTAAACAACACGGAGTTATCTGGTGAAGAAAACGAAGCAGCTGTTGATTTGATGATGAAAATTGATGGCCCGAAAAGCATAAACAGAGTAAACAACAGCAGAATGTTGAAGCTGTATTCCTGGGCCAAGGAAAGAAGCATCCTGGGAATCAGTTATCAATTGTTTGAGAAGCTTTCTGGGGCAGATCATTCTGGAGCCGAGAAAAAAGGCCTAGCTGAGGTAATGAGGGATATCCTTGTTGAGTTTCCTGGTCTTGTAGTATTTGATGAAGGCCACACTCCTCGGAATAACAAAAGTCATATTTGGAAGGCTTTATCAGAAATCAAAACTAAAAAGCGGATTCTTCTGTCCGGAACTCCTTTCCAGAATAATTTTCAGGAGCTCTTTAATACAATCTGCGTGGTGAGGCCTATGTTTGCAGCCTCAATCGACTCTGCTAAATTCACTGGAGATTTTCTCAGATCCCGAGCCCGAAAAGGCAACGTAGAGAAGTGGCAGTGGACTTCTGTGGCCAATTGTAGTGAAAAAGTTGCTGCTGAAAAAGAACAACATGCTACAGAGGTCAAAGAAAAGATTGCCCCGTTCGTCAATGTCTACAAGGGTTCTGTACTGCAAGATAGTCTTCCTGGGTTAAGGAACTCCGTTGTTGTTTTACACCCGATGCAGCTACAGAAAAAGTTTCATCAGAGAATTCAAGGTGTAAAGGAACAATTTCAATATGAACACTTGGAAGCTATAAATTCCATTCATCCTTCCCTCTTGCTTCACGAAGATGCATTTTCTGGTGATTGGGATAGGTTAAAAGAACTGAAATTGAATCCTGATGCTGGAGTGAAGACAAAATTTTTGATGGAACTCATTCGTCTCAGTGATGCTTTGAATGAGAGGGTTCTTGTTTTCTGTCAGTATATTAGTCCATTAACTCTTGCAAGGGATCTTCTGAGATCTCAGTTTCACTGGAGTGAAGGGGAAGAAGTGCTCTACATGGATGGAAAATGTGATATGAAGCAGCGTCAGTCTTCGATGAAAATTTTCAATGACCCATCCAGTAAAGCAAAGGTTTTACTAGCTTCAACTAAAGGATGCTGCGAAGGCATAAGCCTAGTCGGAGCTTCAAGGGTTGTGTTGCTCGATGTCACTTGGAATCCATCGGTGGAGAGGCAAGCAATATCCCGTGCCTACAGGCTGGGGCAGAAAAAAATTGTCTATGTGTACCACCTCCTCATGGATGGAACGAATGAAGAGCACAAATACCGGCGGCAAGTGGACAAGAGCCGTTTGTCTGAGCTGGTATTTTCTGATTCAGACAGGAATGATTCTCTCGAGAAGAAAATCAGAGCCGTTTCTGAAGATAAGATTTTGGAGGAGATGGCTCAACATGAGAAACTGAAACACATATTCGAGAGCATAGCTTTGCTGCATGAAGACATATATTTTGAGCAGCTAGGCCTCTCAACTTTTGGTTAAACCATAGCGGCTGTTTCCCACTTAAGTTTATACAGGGATTTTGTGTGAACTTGATTTTATTCAATATCTGATCTAGGTGTAAAGAAAAAAAGCATAGATGATGATGCACTTGAATTCTCTCTTAGTGAGAATTAGCAAAACTTTGT

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	SNF2
Epigenetic Regulators	CHR

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G05490.1	1	chr31\|chromatin remodeling 31
Prunus persica	Prupe.5G052400.1.p	1	chromatin remodeling 31
Prunus persica	Prupe.5G049200.1.p	0.606	chromatin remodeling 31
Prunus persica	Prupe.5G049200.2.p	0.606	chromatin remodeling 31
Pyrus communis	PCP002070.1	1	-
Pyrus x bretschneideri	Pbr022153.1	1	-
Rosa multiflora	Rmu_sc0005065.1_g000044.1	1	-
Rubus occidentalis	Ro01_G17923	1	-
Fragaria vesca	mrna10657.1	1	chromatin remodeling 31
Solanum lycopersicum	Solyc08g077690.2.1	0.636	chromatin remodeling 31
Solanum lycopersicum	Solyc01g060460.1.1	1	chromatin remodeling 31
Populus trichocarpa	Potri.014G050200.1	1	chromatin remodeling 31
Nicotiana benthamiana	Niben101Scf08797g00013.1	1	Chromodomain-helicase-DNA-binding protein 9
Nicotiana benthamiana	Niben101Scf01745g05007.1	0.891	Chromodomain-helicase-DNA-binding protein 3
Oryza sativa	LOC_Os02g43460.1	1	"required to maintain repression 1, putative"
Oryza sativa	LOC_Os05g32610.1	1	"required to maintain repression 1, putative, expressed"
Zea mays	GRMZM2G154946_P01	1	Required to maintain repression 1; Required to maintain repression1

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0004386	helicase activity	molecular_function

KEGG

KO	Description	Enzyme
K10875	DNA repair and recombination protein RAD54 and RAD54-like protein	EC:3.6.4.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.0852457
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.0221484
SRR5252886	dormant buds	no	dormant buds(1 months)	0.145722
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0.0412222
SRR5252882	dormant buds	no	dormant buds(3 months)	0.0826872
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0228991
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.113931
SRR3744766	flower	no	mature	0.0341518
SRR3744767	flower	no	mature	0.0372554
SRR3744768	flower	no	mature	0.0371979
SRR6308190	stigmas	no	open flowers	0.0331963
SRR6308181	styles	no	open flowers	0.0286026
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.177234
SRR6308192	pollen	no	open flowers	0.501978
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.25512
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.0967506
SRR3384921	fruit	no	2 week after full bloom	0.104727
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0.21019
SRR768129	whole fruit	no	35 days post anthesis	0.0512933
SRR768130	whole fruit	no	60 days post anthesis	0.0429991
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0.0278234
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0.0297651
SRR7403502	fruit	infected with penicillium expansum	mature	0.0230128
SRR7403503	fruit	infected with penicillium expansum	mature	0.0514069
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.736825
SRR1613974	Central seeds	no	20DAPF	1.02439
SRR1613975	Central seeds	no	20DAPF	1.29877
SRR1613976	Lateral seeds	no	20DAPF	0.879453
SRR1613977	Lateral seeds	no	20DAPF	0.835549
SRR1613978	Lateral seeds	no	20DAPF	0.970744
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0.0173664
SRR3744772	stem	no	mature	0.0173214
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.0581791
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0753867
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0.113802
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.0827805
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.841897
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.115361
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.0483563
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0