Gene detail

Detail information of MD04G1066300 Annotation

Gene ID	Annotation
MD04G1066300	cytochrome P450

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1066300	mRNA	Chr04	8844411	8847733	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Cytochrome P450 Family	CYP87D

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Oryza sativa	LOC_Os07g29960.1	1	"cytochrome P450, putative, expressed"

Gene Ontology

GO term	Description	Category
GO:0020037	heme binding	molecular_function
GO:0055114	oxidation-reduction process	biological_process
GO:0005506	iron ion binding	molecular_function
GO:0009055	electron carrier activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.18	p450	31	452	2.30E-59

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.18028
SRR5252888	dormant buds	no	dormant buds(0 month)	3.36032
SRR5252889	dormant buds	no	dormant buds(0 month)	3.08176
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.12602
SRR5252884	dormant buds	no	dormant buds(2 months)	0.402507
SRR5252882	dormant buds	no	dormant buds(3 months)	0.201846
SRR5252883	dormant buds	no	dormant buds(3 months)	0.164959
SRR5252880	dormant buds	no	dormant buds(4 months)	2.51805
SRR5252881	dormant buds	no	dormant buds(4 months)	2.29184
SRR5252878	bud break	no	bud break	5.919
SRR5252879	bud break	no	bud break	2.22493
SRR3744766	flower	no	mature	0.421423
SRR3744767	flower	no	mature	0.423918
SRR3744768	flower	no	mature	0.351625
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.0690548
SRR6308188	filaments	no	open flowers	0.207322
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.106986
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.687094
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	2.6927
SRR3384921	fruit	no	2 week after full bloom	1.43177
SRR3384920	fruit	no	3 week after full bloom	3.4219
SRR3384919	fruit	no	4 week after full bloom	5.74031
SRR3384923	fruit	no	5 week after full bloom	6.52705
SRR3384918	fruit	no	6 week after full bloom	4.53572
SRR3384917	fruit	no	8 week after full bloom	4.70468
SRR3384916	fruit	no	10 week after full bloom	7.14416
SRR3384915	fruit	no	12 week after full bloom	9.821
SRR3384914	fruit	no	14 week after full bloom	8.67198
SRR3384913	fruit	no	16 week after full bloom	4.24194
SRR3384912	fruit	no	18 week after full bloom	5.39509
SRR3384911	fruit	no	19 week after full bloom	2.86357
SRR3384910	fruit	no	20 week after full bloom	0.432685
SRR768128	whole fruit	no	25 days post anthesis	4.72145
SRR768129	whole fruit	no	35 days post anthesis	4.24783
SRR768130	whole fruit	no	60 days post anthesis	4.81775
SRR768131	whole fruit	no	87 days post anthesis	2.36502
SRR7343308	immature fruit flesh	no	immature	13.6728
SRR7343309	immature fruit flesh	no	immature	13.642
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.0484651
SRR1613975	Central seeds	no	20DAPF	0.0131598
SRR1613976	Lateral seeds	no	20DAPF	0.0207636
SRR1613977	Lateral seeds	no	20DAPF	0.0160623
SRR1613978	Lateral seeds	no	20DAPF	0.0368851
SRR3744786	stem	no	mature	0.303503
SRR3744787	stem	no	mature	0.171561
SRR3744772	stem	no	mature	0.363613
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.06913
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	7.93584
SRR1089478	leaf	Virus-free	plantlets	0.272628
SRR1089477	leaf	ASGV-infected	plantlets	0.493441
SRR767660	leaf	uninfected	fully developed	3.31882
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.19768
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.53486
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.1612
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	14.3757
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.05605
SRR6308182	young leaf	no	immature leaves	11.2184
SRR3744769	leaf	no	mature	0.22164
SRR3744770	leaf	no	mature	0.303034
SRR3744771	leaf	no	mature	0.413091
SRR5405145	leaf	no	mature	1.29371
SRR6320561	leaf	no	mature	1.90658