Gene detail

Detail information of MD04G1076000 Annotation

Gene ID	Annotation
MD04G1076000	C4-dicarboxylate transporter/malic acid transport protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1076000	mRNA	Chr04	10244677	10247610	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	TDT

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G12480.1	1	CDI3;OZS1;RCD3;SLAC1\|CARBON DIOXIDE INSENSITIVE 3;OZONE-SENSITIVE 1;RADICAL-INDUCED CELL DEATH 3;SLOW ANION CHANNEL-ASSOCIATED 1
Prunus persica	Prupe.5G083800.1.p	1	C4-dicarboxylate transporter/malic acid transport protein
Pyrus communis	PCP022034.1	1	-
Pyrus x bretschneideri	Pbr015894.1	1	-
Rosa multiflora	Rmu_sc0019054.1_g000003.1	1	-
Rubus occidentalis	Ro05_G25385	1	-
Fragaria vesca	mrna32325.1	1	C4-dicarboxylate transporter/malic acid transport protein
Vitis vinifera	GSVIVT01019915001	1	C4-dicarboxylate transporter/malic acid transport protein
Solanum lycopersicum	Solyc08g079770.2.1	1	C4-dicarboxylate transporter/malic acid transport protein
Populus trichocarpa	Potri.001G114300.1	1	C4-dicarboxylate transporter/malic acid transport protein
Nicotiana benthamiana	Niben101Scf05348g01022.1	1	C4-dicarboxylate transporter/malic acid transport protein LENGTH=556
Oryza sativa	LOC_Os04g48530.1	1	"C4-dicarboxylate transporter/malic acid transport proteindomain containing protein, expressed"
Zea mays	GRMZM2G106921_P01	1	C4-dicarboxylate transporter/malic acid transport protein

Gene Ontology

GO term	Description	Category
GO:0016021	integral component of membrane	cellular component
GO:0055085	transmembrane transport	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.147452
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0669036
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0593529
SRR5252878	bud break	no	bud break	0.532608
SRR5252879	bud break	no	bud break	0.118121
SRR3744766	flower	no	mature	0.0447981
SRR3744767	flower	no	mature	0.0979878
SRR3744768	flower	no	mature	0.118137
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.073238
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.273297
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0
SRR3384922	fruit	no	1 week after full bloom	0.150481
SRR3384921	fruit	no	2 week after full bloom	0.325772
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.0438482
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0.0663131
SRR768130	whole fruit	no	60 days post anthesis	0.11118
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.074873
SRR1613974	Central seeds	no	20DAPF	0.0514395
SRR1613975	Central seeds	no	20DAPF	0.0977721
SRR1613976	Lateral seeds	no	20DAPF	0.110189
SRR1613977	Lateral seeds	no	20DAPF	0.0937646
SRR1613978	Lateral seeds	no	20DAPF	0.117447
SRR3744786	stem	no	mature	0.0230453
SRR3744787	stem	no	mature	0.0227983
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.129084
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0871999
SRR1089478	leaf	Virus-free	plantlets	0.964529
SRR1089477	leaf	ASGV-infected	plantlets	1.12226
SRR767660	leaf	uninfected	fully developed	4.40285
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	2.97309
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	2.52781
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.27333
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.296119
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.374246
SRR6308182	young leaf	no	immature leaves	0.183056
SRR3744769	leaf	no	mature	0.612465
SRR3744770	leaf	no	mature	0.59485
SRR3744771	leaf	no	mature	0.854206
SRR5405145	leaf	no	mature	3.09025
SRR6320561	leaf	no	mature	3.41363