Gene detail

Detail information of MD04G1100000 Annotation

Gene ID	Annotation
MD04G1100000	FASCICLIN-like arabinogalactan-protein 11

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0408	plant-type secondary cell wall biogenesis glucuronoxylan biosynthetic process xylem development tRNA wobble adenosine to inosine editing rhamnogalacturonan I side chain metabolic process tRNA-specific adenosine deaminase activity xylosyltransferase activity galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity glucuronoxylan glucuronosyltransferase activity Golgi apparatus glucuronoxylan metabolic process xylan biosynthetic process galacturonosyltransferase 12/13/14/15 [EC:2.4.1.-]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1100000	mRNA	Chr04	18492811	18493551	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G03170.1	1	ATFLA11;FLA11\|ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11;FASCICLIN-like arabinogalactan-protein 11
Prunus persica	Prupe.6G238300.1.p	1	FASCICLIN-like arabinogalactan-protein 11
Pyrus communis	PCP025085.1	1	-
Pyrus x bretschneideri	Pbr008332.1	1	-
Rosa multiflora	Rmu_sc0005274.1_g000010.1	1	-
Rubus occidentalis	Ro06_G18833	1	-
Fragaria vesca	mrna09705.1	1	FASCICLIN-like arabinogalactan-protein 11
Vitis vinifera	GSVIVT01025660001	1	FASCICLIN-like arabinogalactan-protein 11
Populus trichocarpa	Potri.016G088700.1	1	FASCICLIN-like arabinogalactan-protein 11
Populus trichocarpa	Potri.006G129200.1	0.838	FASCICLIN-like arabinogalactan-protein 11
Nicotiana benthamiana	Niben101Scf00509g01008.1	1	Fasciclin-like arabinogalactan protein 11
Nicotiana benthamiana	Niben101Scf11969g00007.1	0.884	Fasciclin-like arabinogalactan protein 11
Oryza sativa	LOC_Os01g06580.1	1	"fasciclin domain containing protein, expressed"
Oryza sativa	LOC_Os05g07060.1	1	"fasciclin domain containing protein, expressed"
Zea mays	GRMZM2G177242_P01	1	-

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	6.27027
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0.648991
SRR5252886	dormant buds	no	dormant buds(1 months)	0.355828
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.602117
SRR5252879	bud break	no	bud break	8.01219
SRR3744766	flower	no	mature	0.985233
SRR3744767	flower	no	mature	0.695143
SRR3744768	flower	no	mature	0.593704
SRR6308190	stigmas	no	open flowers	0.233465
SRR6308181	styles	no	open flowers	16.9825
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.257102
SRR6308194	sepals	no	open flowers	0.498635
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	48.684
SRR3384922	fruit	no	1 week after full bloom	1.7018
SRR3384921	fruit	no	2 week after full bloom	1.22806
SRR3384920	fruit	no	3 week after full bloom	0.270332
SRR3384919	fruit	no	4 week after full bloom	0.37462
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.925381
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	6.94726
SRR768129	whole fruit	no	35 days post anthesis	1.86076
SRR768130	whole fruit	no	60 days post anthesis	6.23949
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.947545
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.165485
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0.300422
SRR7403508	fruit	infected with penicillium expansum	mature	0.216572
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	1.7138
SRR1613974	Central seeds	no	20DAPF	2.03895
SRR1613975	Central seeds	no	20DAPF	2.7292
SRR1613976	Lateral seeds	no	20DAPF	0.799713
SRR1613977	Lateral seeds	no	20DAPF	0.713819
SRR1613978	Lateral seeds	no	20DAPF	0.582826
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0.133678
SRX765691	seedling shoot apex	no	4-6 week old seedling	49.2483
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	108.341
SRR1089478	leaf	Virus-free	plantlets	8.88346
SRR1089477	leaf	ASGV-infected	plantlets	5.84675
SRR767660	leaf	uninfected	fully developed	16.3535
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	6.9895
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	21.1381
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	47.2554
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	57.2952
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.5761
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	6.25907
SRR6308182	young leaf	no	immature leaves	88.3731
SRR3744769	leaf	no	mature	0.205956
SRR3744770	leaf	no	mature	0.0732685
SRR3744771	leaf	no	mature	0.0725431
SRR5405145	leaf	no	mature	11.1056
SRR6320561	leaf	no	mature	13.2674