Gene detail

Detail information of MD04G1102100 Annotation

Gene ID	Annotation
MD04G1102100	S1FA-like DNA-binding protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0098	proton-transporting V-type ATPase endoplasmic reticulum

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1102100	mRNA	Chr04	18873205	18876355	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	S1Fa-like

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G09735.1	1	S1FA-like DNA-binding protein
Prunus persica	Prupe.6G239600.1.p	1	S1FA-like DNA-binding protein
Pyrus communis	PCP012002.1	1	-
Pyrus x bretschneideri	Pbr034559.1	1	-
Rosa multiflora	Rmu_sc0007933.1_g000019.1	1	-
Rosa multiflora	Rmu_sc0000302.1_g000015.1	1	-
Rubus occidentalis	Ro06_G11615	1	-
Fragaria vesca	mrna09647.1	1	S1FA-like DNA-binding protein
Vitis vinifera	GSVIVT01025155001	1	S1FA-like DNA-binding protein
Solanum lycopersicum	Solyc09g007500.2.1	1	S1FA-like DNA-binding protein
Populus trichocarpa	Potri.016G087400.1	1	S1FA-like DNA-binding protein
Populus trichocarpa	Potri.006G130200.1	0.688	S1FA-like DNA-binding protein
Nicotiana benthamiana	Niben101Scf10260g00003.1	1	DNA-binding protein S1FA
Nicotiana benthamiana	Niben101Scf03990g01008.1	1	DNA-binding protein S1FA
Nicotiana benthamiana	Niben101Scf06397g02002.1	1	DNA-binding protein S1FA
Oryza sativa	LOC_Os04g33440.2	1	"DNA-binding protein S1FA, putative, expressed"
Zea mays	GRMZM2G147424_P01	1	DNA-binding protein S1FA2; DNA-binding protein S1FA2 isoform 1; DNA-binding protein S1FA2 isoform 2

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	86.2238
SRR5252888	dormant buds	no	dormant buds(0 month)	40.1936
SRR5252889	dormant buds	no	dormant buds(0 month)	36.2596
SRR5252886	dormant buds	no	dormant buds(1 months)	22.5946
SRR5252887	dormant buds	no	dormant buds(1 months)	38.6713
SRR5252884	dormant buds	no	dormant buds(2 months)	24.4044
SRR5252882	dormant buds	no	dormant buds(3 months)	25.4753
SRR5252883	dormant buds	no	dormant buds(3 months)	40.687
SRR5252880	dormant buds	no	dormant buds(4 months)	31.6561
SRR5252881	dormant buds	no	dormant buds(4 months)	39.4253
SRR5252878	bud break	no	bud break	26.8133
SRR5252879	bud break	no	bud break	39.0934
SRR3744766	flower	no	mature	38.0161
SRR3744767	flower	no	mature	31.9436
SRR3744768	flower	no	mature	39.1432
SRR6308190	stigmas	no	open flowers	34.9387
SRR6308181	styles	no	open flowers	26.2803
SRR6308188	filaments	no	open flowers	20.1097
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	76.8141
SRR6308192	pollen	no	open flowers	328.244
SRR6308191	petals	no	open flowers	28.0199
SRR6308194	sepals	no	open flowers	19.7015
SRR6308193	receptacles	no	open flowers	33.7284
SRR6308189	ovaries	no	open flowers	24.2861
SRR3384922	fruit	no	1 week after full bloom	63.6148
SRR3384921	fruit	no	2 week after full bloom	67.087
SRR3384920	fruit	no	3 week after full bloom	64.8669
SRR3384919	fruit	no	4 week after full bloom	78.7706
SRR3384923	fruit	no	5 week after full bloom	74.7144
SRR3384918	fruit	no	6 week after full bloom	79.9023
SRR3384917	fruit	no	8 week after full bloom	63.1087
SRR3384916	fruit	no	10 week after full bloom	57.8586
SRR3384915	fruit	no	12 week after full bloom	78.4966
SRR3384914	fruit	no	14 week after full bloom	63.227
SRR3384913	fruit	no	16 week after full bloom	71.9839
SRR3384912	fruit	no	18 week after full bloom	67.5531
SRR3384911	fruit	no	19 week after full bloom	62.0555
SRR3384910	fruit	no	20 week after full bloom	50.9246
SRR768128	whole fruit	no	25 days post anthesis	52.6426
SRR768129	whole fruit	no	35 days post anthesis	44.4333
SRR768130	whole fruit	no	60 days post anthesis	45.1104
SRR768131	whole fruit	no	87 days post anthesis	31.4326
SRR7343308	immature fruit flesh	no	immature	22.8452
SRR7343309	immature fruit flesh	no	immature	41.5107
SRR6320494	ripe fruit flesh	no	mature	40.5292
SRR5405143	ripe fruit peel	no	mature	19.8517
SRR6320572	ripe fruit peel	no	mature	23.462
SRR7403504	fruit	uninfected	mature	38.551
SRR7403506	fruit	uninfected	mature	36.8289
SRR7403507	fruit	uninfected	mature	38.3736
SRR7403500	fruit	infected with penicillium expansum	mature	18.055
SRR7403501	fruit	infected with penicillium expansum	mature	19.1026
SRR7403508	fruit	infected with penicillium expansum	mature	17.7055
SRR7403502	fruit	infected with penicillium expansum	mature	17.9753
SRR7403503	fruit	infected with penicillium expansum	mature	16.9882
SRR7403505	fruit	infected with penicillium expansum	mature	14.7151
SRR1613973	Central seeds	no	20DAPF	53.955
SRR1613974	Central seeds	no	20DAPF	50.3988
SRR1613975	Central seeds	no	20DAPF	56.0039
SRR1613976	Lateral seeds	no	20DAPF	57.7212
SRR1613977	Lateral seeds	no	20DAPF	56.2876
SRR1613978	Lateral seeds	no	20DAPF	52.4444
SRR3744786	stem	no	mature	33.2199
SRR3744787	stem	no	mature	36.522
SRR3744772	stem	no	mature	32.7707
SRX765691	seedling shoot apex	no	4-6 week old seedling	33.0251
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	38.3109
SRR1089478	leaf	Virus-free	plantlets	17.5973
SRR1089477	leaf	ASGV-infected	plantlets	17.7969
SRR767660	leaf	uninfected	fully developed	28.4314
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	36.3874
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	22.5966
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	37.9102
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	47.6503
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	33.8387
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	32.111
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	32.8126
SRR6308182	young leaf	no	immature leaves	42.4583
SRR3744769	leaf	no	mature	32.3364
SRR3744770	leaf	no	mature	31.7485
SRR3744771	leaf	no	mature	31.3858
SRR5405145	leaf	no	mature	12.3601
SRR6320561	leaf	no	mature	21.7293