Gene detail

Detail information of MD04G1103300 Annotation

Gene ID	Annotation
MD04G1103300	Nucleotide-diphospho-sugar transferases superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0296	plant-type secondary cell wall biogenesis cellulose synthase (UDP-forming) activity xylan biosynthetic process cellulose synthase A [EC:2.4.1.12] xylem development glucuronoxylan metabolic process glucuronoxylan biosynthetic process cellulose biosynthetic process rhamnogalacturonan I side chain metabolic process positive regulation of abscisic acid biosynthetic process glucuronoxylan glucuronosyltransferase activity hydrogen peroxide biosynthetic process protein desumoylation response to osmotic stress Golgi apparatus plasma membrane vegetative to reproductive phase transition of meristem defense response to fungus defense response to bacterium xylosyltransferase activity galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity galacturonosyltransferase 12/13/14/15 [EC:2.4.1.-]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1103300	mRNA	Chr04	19074439	19077499	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT43

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT2G37090.1	1	IRX9\|IRREGULAR XYLEM 9
Prunus persica	Prupe.6G239800.1.p	1	Nucleotide-diphospho-sugar transferases superfamily protein
Pyrus communis	PCP012010.1	1	-
Pyrus x bretschneideri	Pbr034572.1	1	-
Rosa multiflora	Rmu_sc0001639.1_g000009.1	1	-
Rubus occidentalis	Ro06_G11604	1	-
Vitis vinifera	GSVIVT01025636001	1	Nucleotide-diphospho-sugar transferases superfamily protein
Populus trichocarpa	Potri.016G086400.1	1	Nucleotide-diphospho-sugar transferases superfamily protein
Populus trichocarpa	Potri.006G131000.1	0.625	Nucleotide-diphospho-sugar transferases superfamily protein
Nicotiana benthamiana	Niben101Scf08580g00016.1	1	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P
Nicotiana benthamiana	Niben101Scf00730g02004.1	0.849	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P
Oryza sativa	LOC_Os03g17850.1	1	"glycosyltransferase family 43 protein, putative, expressed"
Oryza sativa	LOC_Os07g49370.1	1	"glycosyltransferase family 43 protein, putative, expressed"
Oryza sativa	LOC_Os05g03174.1	1	"glycosyltransferase family 43 protein, putative, expressed"
Zea mays	GRMZM2G012874_P01	1	Beta3-glucuronyltransferase;

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	molecular_function

KEGG

KO	Description	Enzyme
K20869	"putative beta-1,4-xylosyltransferase IRX9"	EC:2.4.2.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	8.44969
SRR5252888	dormant buds	no	dormant buds(0 month)	2.87488
SRR5252889	dormant buds	no	dormant buds(0 month)	1.85022
SRR5252886	dormant buds	no	dormant buds(1 months)	2.29939
SRR5252887	dormant buds	no	dormant buds(1 months)	0.503134
SRR5252884	dormant buds	no	dormant buds(2 months)	1.60701
SRR5252882	dormant buds	no	dormant buds(3 months)	0.345374
SRR5252883	dormant buds	no	dormant buds(3 months)	0.062724
SRR5252880	dormant buds	no	dormant buds(4 months)	0.689372
SRR5252881	dormant buds	no	dormant buds(4 months)	0.191294
SRR5252878	bud break	no	bud break	1.25883
SRR5252879	bud break	no	bud break	3.10906
SRR3744766	flower	no	mature	0.506088
SRR3744767	flower	no	mature	0.274194
SRR3744768	flower	no	mature	0.402935
SRR6308190	stigmas	no	open flowers	1.64458
SRR6308181	styles	no	open flowers	7.69951
SRR6308188	filaments	no	open flowers	1.88827
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.365175
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.504243
SRR6308194	sepals	no	open flowers	0.293221
SRR6308193	receptacles	no	open flowers	0.31179
SRR6308189	ovaries	no	open flowers	12.162
SRR3384922	fruit	no	1 week after full bloom	0.754449
SRR3384921	fruit	no	2 week after full bloom	1.16664
SRR3384920	fruit	no	3 week after full bloom	0.154086
SRR3384919	fruit	no	4 week after full bloom	0.379608
SRR3384923	fruit	no	5 week after full bloom	0.315879
SRR3384918	fruit	no	6 week after full bloom	0.401872
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.0942159
SRR3384915	fruit	no	12 week after full bloom	0.0557377
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.0573089
SRR3384910	fruit	no	20 week after full bloom	0.0448713
SRR768128	whole fruit	no	25 days post anthesis	3.04821
SRR768129	whole fruit	no	35 days post anthesis	1.21076
SRR768130	whole fruit	no	60 days post anthesis	5.85104
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.955132
SRR7343309	immature fruit flesh	no	immature	0.635421
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0.0948165
SRR7403507	fruit	uninfected	mature	0.0375262
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.28943
SRR1613974	Central seeds	no	20DAPF	0.298268
SRR1613975	Central seeds	no	20DAPF	0.404945
SRR1613976	Lateral seeds	no	20DAPF	0.331294
SRR1613977	Lateral seeds	no	20DAPF	0.494261
SRR1613978	Lateral seeds	no	20DAPF	0.476423
SRR3744786	stem	no	mature	0.0991803
SRR3744787	stem	no	mature	0.0981255
SRR3744772	stem	no	mature	0.0244671
SRX765691	seedling shoot apex	no	4-6 week old seedling	5.98629
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	16.513
SRR1089478	leaf	Virus-free	plantlets	0.724981
SRR1089477	leaf	ASGV-infected	plantlets	0.642697
SRR767660	leaf	uninfected	fully developed	1.57577
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	1.21529
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.35708
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	3.68995
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.65421
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.87523
SRR6308182	young leaf	no	immature leaves	14.2054
SRR3744769	leaf	no	mature	0.0253384
SRR3744770	leaf	no	mature	0.0266754
SRR3744771	leaf	no	mature	0.0525449
SRR5405145	leaf	no	mature	5.16332
SRR6320561	leaf	no	mature	6.10644