Gene detail

Detail information of MD04G1111600 Annotation

Gene ID	Annotation
MD04G1111600	Glutathione S-transferase family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1111600	mRNA	Chr04	19729018	19731685	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transporter family	CLIC

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G02790.1	1	GSTL3\|Glutathione transferase L3
Pyrus communis	PCP038421.1	1	-
Pyrus x bretschneideri	Pbr029341.1	1	-
Rubus occidentalis	Ro06_G29023	1	-
Vitis vinifera	GSVIVT01025559001	1	Glutathione S-transferase family protein
Vitis vinifera	GSVIVT01025566001	0.679	Glutathione S-transferase family protein
Solanum lycopersicum	Solyc10g084400.1.1	1	Glutathione S-transferase family protein
Populus trichocarpa	Potri.006G133500.1	1	Glutathione S-transferase family protein
Nicotiana benthamiana	Niben101Scf02086g01010.1	1	Glutathione S-transferase L3
Nicotiana benthamiana	Niben101Scf02227g05009.1	0.676	Glutathione S-transferase L3

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K00799	glutathione S-transferase	EC:2.5.1.18

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13417.2	GST_N_3	28	104	7.70E-20
PF16865.1	GST_C_5	119	206	3.00E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.111782
SRR5252888	dormant buds	no	dormant buds(0 month)	0.900842
SRR5252889	dormant buds	no	dormant buds(0 month)	0.173929
SRR5252886	dormant buds	no	dormant buds(1 months)	0.381447
SRR5252887	dormant buds	no	dormant buds(1 months)	0.810806
SRR5252884	dormant buds	no	dormant buds(2 months)	0.161857
SRR5252882	dormant buds	no	dormant buds(3 months)	0.324668
SRR5252883	dormant buds	no	dormant buds(3 months)	0.442226
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0899125
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0.0894694
SRR3744766	flower	no	mature	0.137126
SRR3744767	flower	no	mature	0.0300596
SRR3744768	flower	no	mature	0.273276
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.219663
SRR6308188	filaments	no	open flowers	0.330674
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.850899
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.705358
SRR6308194	sepals	no	open flowers	0.273487
SRR6308193	receptacles	no	open flowers	0.10904
SRR6308189	ovaries	no	open flowers	0.177136
SRR3384922	fruit	no	1 week after full bloom	0.151988
SRR3384921	fruit	no	2 week after full bloom	0.246777
SRR3384920	fruit	no	3 week after full bloom	0
SRR3384919	fruit	no	4 week after full bloom	0.066915
SRR3384923	fruit	no	5 week after full bloom	0.254543
SRR3384918	fruit	no	6 week after full bloom	0.212519
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0.0786008
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	0
SRR768129	whole fruit	no	35 days post anthesis	0.100252
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	11.435
SRR7403501	fruit	infected with penicillium expansum	mature	8.56546
SRR7403508	fruit	infected with penicillium expansum	mature	10.602
SRR7403502	fruit	infected with penicillium expansum	mature	5.22437
SRR7403503	fruit	infected with penicillium expansum	mature	4.2255
SRR7403505	fruit	infected with penicillium expansum	mature	5.33558
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0.0465907
SRR1613975	Central seeds	no	20DAPF	0.0210847
SRR1613976	Lateral seeds	no	20DAPF	0
SRR1613977	Lateral seeds	no	20DAPF	0.0386027
SRR1613978	Lateral seeds	no	20DAPF	0.0393984
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0.112937
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.574821
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0