Gene detail

Detail information of MD04G1131500 Annotation

Gene ID	Annotation
MD04G1131500	laccase 17

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0081	abscisate beta-glucosyltransferase [EC:2.4.1.263]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1131500	mRNA	Chr04	21832691	21838704	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G258000.1.p	1	laccase 17
Pyrus communis	PCP040766.1	1	-
Pyrus x bretschneideri	Pbr029312.1	1	-
Pyrus x bretschneideri	Pbr029299.1	1	-
Rosa multiflora	Rmu_sc0003480.1_g000021.1	1	-
Rubus occidentalis	Ro06_G06098	1	-
Fragaria vesca	mrna18444.1	1	laccase 17
Vitis vinifera	GSVIVT01034139001	1	laccase 17
Solanum lycopersicum	Solyc09g011970.1.1	1	laccase 17
Populus trichocarpa	Potri.006G087500.1	1	laccase 17
Nicotiana benthamiana	Niben101Scf20493g00012.1	1	Laccase-17

Gene Ontology

GO term	Description	Category
GO:0048046	apoplast	cellular component
GO:0052716	hydroquinone:oxygen oxidoreductase activity	molecular_function
GO:0046274	lignin catabolic process	biological_process
GO:0055114	oxidation-reduction process	biological_process
GO:0005507	copper ion binding	molecular_function

KEGG

KO	Description	Enzyme
K05909	laccase	EC:1.10.3.2

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07732.11	Cu-oxidase_3	60	172	5.00E-42
PF00394.18	Cu-oxidase	185	335	1.50E-40
PF07731.10	Cu-oxidase_2	460	581	6.70E-40

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.36562
SRR5252888	dormant buds	no	dormant buds(0 month)	0.250405
SRR5252889	dormant buds	no	dormant buds(0 month)	0.241733
SRR5252886	dormant buds	no	dormant buds(1 months)	0.318089
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0.089982
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0.180134
SRR5252881	dormant buds	no	dormant buds(4 months)	0.0499854
SRR5252878	bud break	no	bud break	0.0897096
SRR5252879	bud break	no	bud break	0.0994782
SRR3744766	flower	no	mature	0.131636
SRR3744767	flower	no	mature	0.213749
SRR3744768	flower	no	mature	0.164926
SRR6308190	stigmas	no	open flowers	0.719033
SRR6308181	styles	no	open flowers	3.03171
SRR6308188	filaments	no	open flowers	0.371329
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.317567
SRR6308194	sepals	no	open flowers	0.307755
SRR6308193	receptacles	no	open flowers	0.122724
SRR6308189	ovaries	no	open flowers	11.7214
SRR3384922	fruit	no	1 week after full bloom	0.295696
SRR3384921	fruit	no	2 week after full bloom	0.0914492
SRR3384920	fruit	no	3 week after full bloom	0.0805226
SRR3384919	fruit	no	4 week after full bloom	0
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.157508
SRR3384917	fruit	no	8 week after full bloom	0
SRR3384916	fruit	no	10 week after full bloom	0.11078
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	3.2568
SRR768129	whole fruit	no	35 days post anthesis	0.111764
SRR768130	whole fruit	no	60 days post anthesis	4.59088
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0.498947
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0.207892
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.328246
SRR1613974	Central seeds	no	20DAPF	0.286228
SRR1613975	Central seeds	no	20DAPF	0.129533
SRR1613976	Lateral seeds	no	20DAPF	0.111479
SRR1613977	Lateral seeds	no	20DAPF	0.136543
SRR1613978	Lateral seeds	no	20DAPF	0.165029
SRR3744786	stem	no	mature	0.0386939
SRR3744787	stem	no	mature	0.0574089
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.411056
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.310731
SRR1089478	leaf	Virus-free	plantlets	0.81319
SRR1089477	leaf	ASGV-infected	plantlets	0.37847
SRR767660	leaf	uninfected	fully developed	1.98007
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.777049
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.322373
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	2.00003
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.525933
SRR6308182	young leaf	no	immature leaves	2.21626
SRR3744769	leaf	no	mature	0.0791473
SRR3744770	leaf	no	mature	0.0415894
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	2.60362
SRR6320561	leaf	no	mature	0.746849