Gene detail

Detail information of MD04G1132400 Annotation

Gene ID	Annotation
MD04G1132400	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0966	glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity positive regulation of hydrogen peroxide biosynthetic process interchromatin granule organic anion transmembrane transporter activity 3-chloroallyl aldehyde dehydrogenase activity inorganic phosphate transmembrane transporter activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1132400	mRNA	Chr04	21908063	21912677	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G258700.1.p	1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Pyrus communis	PCP015021.1	1	-
Pyrus x bretschneideri	Pbr029293.1	1	-
Pyrus x bretschneideri	Pbr029318.2	1	-
Fragaria vesca	mrna18454.1	1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Vitis vinifera	GSVIVT01016505001	1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Populus trichocarpa	Potri.010G200900.1	1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Populus trichocarpa	Potri.010G201000.1	0.613	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Gene Ontology

GO term	Description	Category
GO:0055114	oxidation-reduction process	biological_process
GO:0005506	iron ion binding	molecular_function
GO:0016491	oxidoreductase activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03171.16	2OG-FeII_Oxy	200	297	6.70E-28

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	31.7676
SRR5252888	dormant buds	no	dormant buds(0 month)	0
SRR5252889	dormant buds	no	dormant buds(0 month)	0
SRR5252886	dormant buds	no	dormant buds(1 months)	0.157939
SRR5252887	dormant buds	no	dormant buds(1 months)	0
SRR5252884	dormant buds	no	dormant buds(2 months)	0
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0
SRR5252878	bud break	no	bud break	0.267257
SRR5252879	bud break	no	bud break	1.85225
SRR3744766	flower	no	mature	4.68808
SRR3744767	flower	no	mature	4.20509
SRR3744768	flower	no	mature	4.95862
SRR6308190	stigmas	no	open flowers	16.2735
SRR6308181	styles	no	open flowers	15.0837
SRR6308188	filaments	no	open flowers	9.07109
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.54098
SRR6308192	pollen	no	open flowers	0.806915
SRR6308191	petals	no	open flowers	39.7898
SRR6308194	sepals	no	open flowers	19.9086
SRR6308193	receptacles	no	open flowers	2.26804
SRR6308189	ovaries	no	open flowers	7.88694
SRR3384922	fruit	no	1 week after full bloom	5.34886
SRR3384921	fruit	no	2 week after full bloom	3.06519
SRR3384920	fruit	no	3 week after full bloom	14.0946
SRR3384919	fruit	no	4 week after full bloom	16.8446
SRR3384923	fruit	no	5 week after full bloom	32.3015
SRR3384918	fruit	no	6 week after full bloom	31.0309
SRR3384917	fruit	no	8 week after full bloom	44.6312
SRR3384916	fruit	no	10 week after full bloom	48.7931
SRR3384915	fruit	no	12 week after full bloom	29.8746
SRR3384914	fruit	no	14 week after full bloom	53.1507
SRR3384913	fruit	no	16 week after full bloom	24.2381
SRR3384912	fruit	no	18 week after full bloom	17.9318
SRR3384911	fruit	no	19 week after full bloom	15.0572
SRR3384910	fruit	no	20 week after full bloom	2.67226
SRR768128	whole fruit	no	25 days post anthesis	9.5353
SRR768129	whole fruit	no	35 days post anthesis	7.72873
SRR768130	whole fruit	no	60 days post anthesis	21.0392
SRR768131	whole fruit	no	87 days post anthesis	21.6046
SRR7343308	immature fruit flesh	no	immature	15.2473
SRR7343309	immature fruit flesh	no	immature	13.3626
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0349189
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0.0875936
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0833733
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0
SRR1613974	Central seeds	no	20DAPF	0
SRR1613975	Central seeds	no	20DAPF	0
SRR1613976	Lateral seeds	no	20DAPF	0.0551959
SRR1613977	Lateral seeds	no	20DAPF	0
SRR1613978	Lateral seeds	no	20DAPF	0
SRR3744786	stem	no	mature	0.0871734
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0.0286789
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.8667
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	5.8505
SRR1089478	leaf	Virus-free	plantlets	7.48866
SRR1089477	leaf	ASGV-infected	plantlets	12.461
SRR767660	leaf	uninfected	fully developed	63.9401
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	37.7082
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	48.3693
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	17.4071
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	45.9558
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	36.2993
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	22.0146
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	32.8
SRR6308182	young leaf	no	immature leaves	6.78025
SRR3744769	leaf	no	mature	0.741896
SRR3744770	leaf	no	mature	0.844673
SRR3744771	leaf	no	mature	0.739865
SRR5405145	leaf	no	mature	48.2097
SRR6320561	leaf	no	mature	43.9484