Gene detail

Detail information of MD04G1151200 Annotation

Gene ID	Annotation
MD04G1151200	Peptidase S24/S26A/S26B/S26C family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1151200	mRNA	Chr04	23985529	23987472	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G08980.1	1	Peptidase S24/S26A/S26B/S26C family protein
Prunus persica	Prupe.6G276100.1.p	1	Peptidase S24/S26A/S26B/S26C family protein
Pyrus communis	PCP035084.1	1	-
Pyrus x bretschneideri	Pbr021655.1	1	-
Fragaria vesca	mrna18860.1	1	Peptidase S24/S26A/S26B/S26C family protein
Vitis vinifera	GSVIVT01033968001	1	Peptidase S24/S26A/S26B/S26C family protein
Solanum lycopersicum	Solyc09g014510.2.1	1	Peptidase S24/S26A/S26B/S26C family protein
Solanum lycopersicum	Solyc09g025250.2.1	1	Peptidase S24/S26A/S26B/S26C family protein
Populus trichocarpa	Potri.016G115100.1	1	Peptidase S24/S26A/S26B/S26C family protein
Nicotiana benthamiana	Niben101Scf11384g00026.1	1	Mitochondrial inner membrane protease subunit 2
Nicotiana benthamiana	Niben101Scf08975g00005.1	0.791	Mitochondrial inner membrane protease subunit 2
Oryza sativa	LOC_Os04g08340.1	1	"OsSigP3 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"
Zea mays	GRMZM2G029141_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0008236	serine-type peptidase activity	molecular_function
GO:0042720	mitochondrial inner membrane peptidase complex	cellular component
GO:0006627	protein processing involved in protein targeting to mitochondrion	biological_process

KEGG

KO	Description	Enzyme
K09648	mitochondrial inner membrane protease subunit 2	EC:3.4.21.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00717.19	Peptidase_S24	34	113	2.70E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	4.48987
SRR5252888	dormant buds	no	dormant buds(0 month)	2.40114
SRR5252889	dormant buds	no	dormant buds(0 month)	1.94712
SRR5252886	dormant buds	no	dormant buds(1 months)	2.03345
SRR5252887	dormant buds	no	dormant buds(1 months)	1.40475
SRR5252884	dormant buds	no	dormant buds(2 months)	1.03541
SRR5252882	dormant buds	no	dormant buds(3 months)	1.55769
SRR5252883	dormant buds	no	dormant buds(3 months)	1.32018
SRR5252880	dormant buds	no	dormant buds(4 months)	1.55459
SRR5252881	dormant buds	no	dormant buds(4 months)	2.39657
SRR5252878	bud break	no	bud break	2.92479
SRR5252879	bud break	no	bud break	5.43725
SRR3744766	flower	no	mature	1.3917
SRR3744767	flower	no	mature	0.963816
SRR3744768	flower	no	mature	1.7868
SRR6308190	stigmas	no	open flowers	1.08894
SRR6308181	styles	no	open flowers	0.584355
SRR6308188	filaments	no	open flowers	1.40816
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.181091
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	1.50136
SRR6308194	sepals	no	open flowers	1.16427
SRR6308193	receptacles	no	open flowers	2.66907
SRR6308189	ovaries	no	open flowers	1.79073
SRR3384922	fruit	no	1 week after full bloom	2.99792
SRR3384921	fruit	no	2 week after full bloom	2.98195
SRR3384920	fruit	no	3 week after full bloom	3.16623
SRR3384919	fruit	no	4 week after full bloom	2.99648
SRR3384923	fruit	no	5 week after full bloom	2.91747
SRR3384918	fruit	no	6 week after full bloom	1.51058
SRR3384917	fruit	no	8 week after full bloom	1.30853
SRR3384916	fruit	no	10 week after full bloom	1.34575
SRR3384915	fruit	no	12 week after full bloom	1.42467
SRR3384914	fruit	no	14 week after full bloom	1.70684
SRR3384913	fruit	no	16 week after full bloom	1.34025
SRR3384912	fruit	no	18 week after full bloom	1.16791
SRR3384911	fruit	no	19 week after full bloom	0.861665
SRR3384910	fruit	no	20 week after full bloom	1.68665
SRR768128	whole fruit	no	25 days post anthesis	4.28099
SRR768129	whole fruit	no	35 days post anthesis	2.45743
SRR768130	whole fruit	no	60 days post anthesis	1.61222
SRR768131	whole fruit	no	87 days post anthesis	0.539346
SRR7343308	immature fruit flesh	no	immature	1.91645
SRR7343309	immature fruit flesh	no	immature	2.87047
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.804904
SRR6320572	ripe fruit peel	no	mature	1.57038
SRR7403504	fruit	uninfected	mature	1.033
SRR7403506	fruit	uninfected	mature	1.32843
SRR7403507	fruit	uninfected	mature	1.57729
SRR7403500	fruit	infected with penicillium expansum	mature	6.38438
SRR7403501	fruit	infected with penicillium expansum	mature	4.65101
SRR7403508	fruit	infected with penicillium expansum	mature	7.32666
SRR7403502	fruit	infected with penicillium expansum	mature	5.37654
SRR7403503	fruit	infected with penicillium expansum	mature	5.04005
SRR7403505	fruit	infected with penicillium expansum	mature	6.07266
SRR1613973	Central seeds	no	20DAPF	5.22635
SRR1613974	Central seeds	no	20DAPF	4.64961
SRR1613975	Central seeds	no	20DAPF	5.14441
SRR1613976	Lateral seeds	no	20DAPF	3.86349
SRR1613977	Lateral seeds	no	20DAPF	3.75647
SRR1613978	Lateral seeds	no	20DAPF	4.70143
SRR3744786	stem	no	mature	1.20593
SRR3744787	stem	no	mature	0.746143
SRR3744772	stem	no	mature	1.15346
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.83582
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.70926
SRR1089478	leaf	Virus-free	plantlets	0.775614
SRR1089477	leaf	ASGV-infected	plantlets	1.44393
SRR767660	leaf	uninfected	fully developed	1.88706
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.565854
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	4.06365
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.204022
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.18422
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.20598
SRR6308182	young leaf	no	immature leaves	4.774
SRR3744769	leaf	no	mature	1.19158
SRR3744770	leaf	no	mature	1.05645
SRR3744771	leaf	no	mature	1.8037
SRR5405145	leaf	no	mature	0.276829
SRR6320561	leaf	no	mature	1.01301