Gene detail

Detail information of MD04G1163500 Annotation

Gene ID	Annotation
MD04G1163500	ubiquitin activating enzyme 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0225	cytosol nuclear pore ARF guanyl-nucleotide exchange factor activity regulation of catalytic activity regulation of ARF protein signal transduction protein import into nucleus endocytosis tRNA binding nucleobase-containing compound transmembrane transporter activity plasmodesma vesicle-mediated transport clathrin coat of trans-Golgi network vesicle tRNA export from nucleus positive regulation of organelle organization protein transporter activity clathrin coat of coated pit 1 eukaryotic translation initiation factor 3 complex early endosome exportin-T brefeldin A-inhibited guanine nucleotide-exchange protein vegetative to reproductive phase transition of meristem clathrin heavy chain

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1163500	mRNA	Chr04	25479404	25485616	-

Sequences

CDS:

MD04G1163500

CCACCTCTTTCACTCTCTGTCTGTCTCCGTCTCTCTACAAAGAGAGATGAACCGCGACATCAGGACCATCGCATCTCTCTGCAGAAGCTGAAACAGGAAGAAACCATAACAAAAACCTGCAATCGACGCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGATATTCTCACCGTAGCTTCTTCGCCACAGTTTGTCTCGAGTGTGGAATCCGAGACTGATTACTGATAAAATGAGATTTTGGTGTTCCGGCAGTTCATCGCACTATATGCTTCCTAGAAAGAGAGAAGCAGTGGGCGGAGAGGTTGTAGTAAACGAAGCCACGGAATCTCCGATCAAGAAGCCTCGCGGAGCTGCGACTACTGACGATTCTAAGAGCAACGAAAACAAAAACACCACCACCTTTAACAACAACAGCAACAGCAGTAGCAGCATCGAAGAATCTCCAATCATGGCATTGGGCAACGGGAGCTCAAACGATATCGATGAAGATCTCCACAGCCGGCAGTTGGCGGTGTATGGCAGGGAGACCATGCGCCGGCTCTTTGCCTCCAACATTCTCGTCTCGGGGATGCAGGGCTTGGGCGCTGAGATTGCAAAAAACCTTGTTCTTGCCGGTGTCAAGTCTGTGACTTTGCATGATGATGGAGTTGTTGAGTTGTGGGACTTGTCAAGCAACTTCTTCTTTTCTGAGGAGGATGTTGGAAAGAATCGGGCCCTTGCCTGTGTTCAAAAATTACAAGAACTAAACAACGCTGTTGTCATTTCGACCATAACAACTGAACTGACTAAAGAGAAACTCTCTGATTTCCAGGCTGTAGTTTTCACTGATATTAGCTTGGAGAAGGCAATTGAATTCGATGACTACTGCCATAATCATAACCCTCCCATCTCTTTTATAAAATCAGAAGTACGAGGCCTTTTTGGCAGCGTATTTTGTGACTTTGGCCCTGAGTTCACTGTTCTTGATGTTGATGGTGAGGATCCGCATACAGGTATAATTGCATCGATTAGTAATGACAACCCTGCTCTCATAGCATGTGTTGATGATGAGAGGCTTGAGTTCCAGGATGGGGATTTAGTTGTGTTCACCGAAGTCCATGGAATGACCGAGTTGAATGATGGAAAGCCGAGGAAGGTTAAGAATGCAAGACCTTACTCATTCACAATCGAGGAGGACACTACCAATTATGCTGCATATGAGAAAGGGGGTATAGTCTCACAGGTGAAGCAACCCAAGGTGTTGAACTTTAAGCCTCTGCGAGAAGCACTCAAGGATCATGGTGACTTCCTTCTGAGTGACTTCTCCAAGTTTGATCGCCCACCTCTCCTACACTTGGCATTTCAGGCACTAGATAAGTTCATTTCAGAGTTGGGGCGTTTCCCTGTTGCTGGATCTGAGGATGATGCTACAAAATTCATATCTATGGTAACTAACATCAATGATAGCTCAGCAGATGGTAAGCTTGAGGAGATTGACCACAAGGTTCTTCGTCATTTTGCCTTTGGTGCTAGAGCTGTGCTAAATCCCATGGCTGCTATGTTTGGTGGTATTGTTGGACAAGAAGTTGTGAAGGCCTGTTCTGCTAAGTTCCATCCTCTTTTCCAGTTTTTCTACTTCGATTCAGTTGAATCCCTTCCTTCAGAGACCTTGGATCCTAATGATTTGAAGCCTTTGAATAGCCGATATGATGCACAAATTTCAGTATTTGGAGCCAAGCTCCAGAAAAAGCTGGAGGACACAAAAGTGTTCACTGTCGGATCTGGGGCACTAGGATGTGAGTTTTTGAAGAATTTAGCATTGATGGGTGTCTCTTGTGGTAAAGAAGGGAAGTTAACAATAACAGATGATGATGTCATTGAGAAGAGTAACCTTAGCAGGCAATTTCTCTTTAGAGATTGGAACATTGGGCAGGCTAAATCAACAGTAGCTGCCTCTGCTGCTATGGTGATAAATGGTCGTCTGAACATTGAAGCACTGCAGAATCGTGCAAGCCCAGATACTGAAAATGTGTTTGATGATACTTTTTGGGAGAATTTGGATGTTGTTATCAATGCTCTGGATAATGTGAATGCAAGGCTTTACATTGATCAGAGATGCTTGTACTTCCAGAAGCCACTTTTGGAGTCAGGAACTCTAGGTGCCAAGTGCAACACGCAGATGGTCATTCCTCACCTGACTGAAAATTATGGAGCATCACGGGACCCACCTGAAAAGCAAGCACCCATGTGCACAGTTCATTCATTCCCTCACAACATTGACCATTGCTTGACATGGGCCCGGTCTGAGTTTGAGGGTCTACTTGAGAAGGTGCCAGCTGAAGTAAATGCCTACCTGACTAATCCTAATGAATACATTGCCGCAATGAAAAATGCTGGTGATGCTCAGGCCAGGAACAACTTGGAAAGTGTCATTGAATGCCTTGACAAAGAGAGATGTGAGACGTTCCAAGATTGCATAAGCTGGGCCCGTCTGAAGTTTGAGGACTACTTTGCTAACCGTGTGAAGCAGTTAACTTATACTTTTCCTGAGGATGCTACAACCAGTAGTGGGACACCATTTTGGTCTGCCCCCAAGCGTTTTCCTCGCCCACTGCAGTTCTCAGTTGATGATCTCAGCCACCTCCAGTTTTTAATGGCAGCATCTATACTACGAGCAGAGACATTCAACATTCCAATTCCTGATTGGGTCAAGTCTCGTGCAAAGTTTGCTGATGCTGTTAACAAAGTGATGGTACCGGATTTTCAGCCTAAGAAAGATGTGAAGATTGAGACTGATGAGAAAGCTACAACCGTCTTACCAGCATCGATTGATGATGCTGCGGTTATCAACGAGTTAGTTGTGAAGTTAGAAAGATGCAAGGAGCGGCTGCCACCAGGCTTCAAGATGAACCCGATTCAGTTTGAGAAGGATGATGATACAAACTATCATATGGACCTAATAGCTGGATTTGCAAATATGAGGGCAAGGAACTATGGCATTGGTGAAGTCGACAAACTGAAAGCCAAATTCATTGCAGGAAGAATCATTCCTGCAATTGCAACATCAACTGCTCTGGCAACCGGCCTTGTTTGCTTGGAGCTGTACAAGGTTCTGGACGGAGGGCACAAGGTTGAAGACTACCGAAACACCTTTGCCAATCTCTCCCTTCCTCTGTTCTCCATGGCTGAACCAGTCCCTCCTAAAGTCATCAAGCACCAAGATATGAAGTGGACAGTATGGGACAGGTGGATTATAAAGGACAACCCAACTTTAAAGCAGCTCCTCAAGTGGCTCGAAGACCAGGGCTTAAACGCGTACAGCATCTCCTATGGAAGTTGCCTGCTCTTTAACAGCATGTTCCCGAAGCACAAGGAGCGCATGGACAGGACCATGGTGGATTTGGCTACGAGTATTGCGAAGGCAGAACTGCCTGCTAATAGGAAGCACTTTGACGTGGTGGTGGCTTGCGAAGATGAAGAAGAGAACGATATTGATATCCCGCAAATCTCCATTTACTTCAAGTAGGCGTTTCAGTTGATGAGCTCATCAAGCAAAACCGGAATGCGATGTTCAGGACGTGAACTCCCCATCTCATTTGACTTTTTAAGTTTATATAAGCAAACGGAGTTTTATATGTACTCAAATATATGTTGACTTTAGAGTAGCACCGACCGATTTTCCGAACTTGGAGTCTCTGGAGTCTTTACGTTCCTGCCGATTTTAGGTCCATCTAGTTGTACTTTTCAAATGTTGGTTGTTTATTTCTGCCAATAATGTTACGTGGTGAAATTTGTTATTTTTCCTTTTCAGTTGAATTTTTCTGCTGATGTACGGTTTGTAGTTGATTTTTTGTTGCCTTTTCTTCTTCTTTCTTCTAGTGAATCTCTTTTACTGTCACACATATCGGTCTTTTTTAAACAATAGCGTTAGTGGGGAAAGGGATTAGTGGGAATTGAACT

Protein:

Gene family

Gene family	Subfamily
Ubiquitin Family	ThiF

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G282900.1.p	1	ubiquitin activating enzyme 2
Pyrus communis	PCP024303.1	1	-
Pyrus x bretschneideri	Pbr019421.1	1	-
Rosa multiflora	Rmu_sc0006715.1_g000003.1	1	-
Rubus occidentalis	Ro06_G05631	1	-
Fragaria vesca	mrna13444.1	1	ubiquitin-activating enzyme 1
Vitis vinifera	GSVIVT01030304001	1	ubiquitin-activating enzyme 1
Solanum lycopersicum	Solyc09g018450.2.1	1	ubiquitin-activating enzyme 1
Nicotiana benthamiana	Niben101Scf03202g13010.1	1	Ubiquitin-activating enzyme E1 1
Nicotiana benthamiana	Niben101Scf11306g00009.1	0.907	Ubiquitin-activating enzyme E1 1
Oryza sativa	LOC_Os03g18380.1	1	"ubiquitin-activating enzyme, putative, expressed"
Oryza sativa	LOC_Os07g49230.2	1	"ubiquitin-activating enzyme, putative, expressed"
Oryza sativa	LOC_Os11g01510.3	1	"ubiquitin-activating enzyme, putative, expressed"
Zea mays	GRMZM2G111818_P01	1	-
Zea mays	GRMZM2G057441_P01	0.837	-

Gene Ontology

GO term	Description	Category
GO:0008641	small protein activating enzyme activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006464	cellular protein modification process	biological_process

KEGG

KO	Description	Enzyme
K03178	ubiquitin-activating enzyme E1	EC:6.2.1.45

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.17	ThiF	90	467	1.50E-29
PF16190.1	E1_FCCH	263	334	2.50E-27
PF16191.1	E1_4HB	335	404	4.70E-21
PF00899.17	ThiF	486	985	2.00E-72
PF10585.5	UBA_e1_thiolCys	673	926	2.80E-81
PF09358.6	E1_UFD	997	1086	8.60E-21

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	25.4405
SRR5252888	dormant buds	no	dormant buds(0 month)	77.3835
SRR5252889	dormant buds	no	dormant buds(0 month)	79.6229
SRR5252886	dormant buds	no	dormant buds(1 months)	132.174
SRR5252887	dormant buds	no	dormant buds(1 months)	141.677
SRR5252884	dormant buds	no	dormant buds(2 months)	108.199
SRR5252882	dormant buds	no	dormant buds(3 months)	86.2152
SRR5252883	dormant buds	no	dormant buds(3 months)	98.4476
SRR5252880	dormant buds	no	dormant buds(4 months)	75.1064
SRR5252881	dormant buds	no	dormant buds(4 months)	67.2421
SRR5252878	bud break	no	bud break	88.638
SRR5252879	bud break	no	bud break	69.5768
SRR3744766	flower	no	mature	33.2752
SRR3744767	flower	no	mature	33.6714
SRR3744768	flower	no	mature	31.8361
SRR6308190	stigmas	no	open flowers	37.3882
SRR6308181	styles	no	open flowers	41.3323
SRR6308188	filaments	no	open flowers	41.3994
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	36.142
SRR6308192	pollen	no	open flowers	64.9581
SRR6308191	petals	no	open flowers	55.3168
SRR6308194	sepals	no	open flowers	33.8447
SRR6308193	receptacles	no	open flowers	48.123
SRR6308189	ovaries	no	open flowers	44.4817
SRR3384922	fruit	no	1 week after full bloom	23.5418
SRR3384921	fruit	no	2 week after full bloom	20.039
SRR3384920	fruit	no	3 week after full bloom	17.6256
SRR3384919	fruit	no	4 week after full bloom	18.3123
SRR3384923	fruit	no	5 week after full bloom	20.6025
SRR3384918	fruit	no	6 week after full bloom	18.2283
SRR3384917	fruit	no	8 week after full bloom	18.6053
SRR3384916	fruit	no	10 week after full bloom	20.6144
SRR3384915	fruit	no	12 week after full bloom	18.1117
SRR3384914	fruit	no	14 week after full bloom	21.1432
SRR3384913	fruit	no	16 week after full bloom	24.5954
SRR3384912	fruit	no	18 week after full bloom	26.2139
SRR3384911	fruit	no	19 week after full bloom	26.1649
SRR3384910	fruit	no	20 week after full bloom	29.0947
SRR768128	whole fruit	no	25 days post anthesis	24.9299
SRR768129	whole fruit	no	35 days post anthesis	25.1197
SRR768130	whole fruit	no	60 days post anthesis	28.7597
SRR768131	whole fruit	no	87 days post anthesis	49.9639
SRR7343308	immature fruit flesh	no	immature	38.192
SRR7343309	immature fruit flesh	no	immature	37.8462
SRR6320494	ripe fruit flesh	no	mature	41.7879
SRR5405143	ripe fruit peel	no	mature	55.1103
SRR6320572	ripe fruit peel	no	mature	39.2019
SRR7403504	fruit	uninfected	mature	39.6023
SRR7403506	fruit	uninfected	mature	41.6574
SRR7403507	fruit	uninfected	mature	42.4432
SRR7403500	fruit	infected with penicillium expansum	mature	122.203
SRR7403501	fruit	infected with penicillium expansum	mature	109.013
SRR7403508	fruit	infected with penicillium expansum	mature	116.092
SRR7403502	fruit	infected with penicillium expansum	mature	129.095
SRR7403503	fruit	infected with penicillium expansum	mature	129.844
SRR7403505	fruit	infected with penicillium expansum	mature	137.335
SRR1613973	Central seeds	no	20DAPF	28.9043
SRR1613974	Central seeds	no	20DAPF	29.1183
SRR1613975	Central seeds	no	20DAPF	30.249
SRR1613976	Lateral seeds	no	20DAPF	31.9123
SRR1613977	Lateral seeds	no	20DAPF	28.8446
SRR1613978	Lateral seeds	no	20DAPF	30.9728
SRR3744786	stem	no	mature	39.716
SRR3744787	stem	no	mature	38.7431
SRR3744772	stem	no	mature	39.0105
SRX765691	seedling shoot apex	no	4-6 week old seedling	36.4791
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	36.7424
SRR1089478	leaf	Virus-free	plantlets	65.8534
SRR1089477	leaf	ASGV-infected	plantlets	58.435
SRR767660	leaf	uninfected	fully developed	23.9175
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	14.0878
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	25.765
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.60839
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	20.7414
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	27.9412
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	43.1109
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	34.9946
SRR6308182	young leaf	no	immature leaves	25.5409
SRR3744769	leaf	no	mature	34.2422
SRR3744770	leaf	no	mature	36.1813
SRR3744771	leaf	no	mature	36.3921
SRR5405145	leaf	no	mature	36.5447
SRR6320561	leaf	no	mature	22.6499