Gene detail

Detail information of MD04G1166800 Annotation

Gene ID	Annotation
MD04G1166800	ARM repeat superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0507	integrator complex subunit 4 exosome complex exonuclease RRP6 [EC:3.1.13.-] potassium channel activity 3'-5' exonuclease activity intercellular transport root radial pattern formation histone H3-K36 methylation histone H3-K4 methylation nucleobase-containing compound metabolic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1166800	mRNA	Chr04	25701425	25706105	+

Sequences

CDS:

MD04G1166800

ATGGCGGACCACGTGCTCCTCAGGTGCGGTCACCCTCTCATCCTCCCGACAATTTCCGCCGACGAACCTCTCTCTCCCGAAGTCCTGCCTCCCCTGAGATCCCTCATCGTCAACCCCTCAACTCCCGGGCCCACAATCACCTCCATCCTCGAAACCCTAACTCGCTCTCTCCCACTCAGTCGCGATCCGCTCACCATCCGGTTCACTCTCAAGCTCCTCTCCGACCTCGCCTCGCGACACCCCCACCTCTCGTCCTTCGTATTCGACTCGGTCCGTTCCCACCTCCTCTCCACCGGCTCGCCCCGCGTTGCTGCCGACTCACTCGACGCGCTTGCTTCAATCGTGGAGAGCAACCGAGCCCTAGCTCCCGGAATTGAAGAATTGGATGACCGGCTGTTCGCCTCGCTGTGTTTCAGTCCGTCTTGCTCCGTACGGCCGTGGCTGCTCAGAAACGCCGAGAGGTTCGGCGTACAGCCTCATTTGCTGTTCACTCTGTTTCTAGGGTTTACGAAGGATCCATATCCGAATGTGAGAAAAGAGGCGTTGGACGGGCTCGTTGGGTTGAGTGAGAACGGTGTGATCGAGGACCGTGACATGATCGAAGGTTGCTATTTTCGTGCCGTTGAGCTCCTAAACGACATGGAAGATTGCGTTCGATTGGCTGCCGTTCGCACGGTGTGTTCTTGGGGTCTAATGCTCGTGGCGTGCATTTCGGAGATGAAAGCATATTGGTCTGCTGAAGTATTTGTCAAACTTTGTTCAATGGTGAGAGACATGAGCATGGAGGTTAGGGTTGAAGCTTTTTATGCTCTTGGGAAGATAAAGTTGGTATCTGAGGATATTCTTTTGCAAACCCTGTCAAAGAGAGTTCTGGTAACCACGAAAGGAAAAGGATCTTTTGCTCAGTGCTCTGATGAACAACTAGAAGTATCAGGTTCAAGTGTTGCTGGAGCTTTCGTGCACGGACTAGAGGATGAATTTCACGAGGTGCGAAAAGGTGCCTGTCATGCATTGAGAACACTGGCCATACTCTCTGCCAAGTTTGCTGGAGAAGCCTTAAACTTATTGATGGATGTACTGAATGATGACTCAATACTTGTTCGGTTACAAGCTTTTGAAACTATGCATCAATTGGCTACCTTTGACCTTCTGAAGGTGCAAGAAGCACACATGCATATGTTTCTTGGCACTCTGGTTGACAATGATACCCTCATAAGATCTTCCGCAAGGAAAGTACTTACATTGGCAAAGCTGCCTCAGTTAAAGATGTTTAGGTTAACTATTGATGCCCTTCTAGAAAATATGGAAAGATATCCACAGGATGAAGCAGATGCATTATCTGTTTTGTTTCATATTGGACGAAATCATGGAAAGTTTGTGGTCCGCATGATTGAGGAAGTTTCTCCACAGATGGAGCCAATGTCTAATGGAAAGTTGGACTTTGATAGCGTGAGAGTGGCCGGCTTGCTAGTTCTGGCCATCTCAGCTCCAGTTTCAGATGAACGTGATTGCAATATTCCACCTGCAATATTTTCTTATGCAGTAACGTATCTGGGAAGGATTTCTCATGCACTGAGTGATATTATCAATCAAAATAGCCTTTTGGATTATTTGTCTCAGTGCAGTAGATCCCAAGGACCATATGATGTAGAGTTCAACAAGTTCAACTTTAAAGCGGGGGAGCCATGCTTACCTTTACTTGAAAATGATGGTTCAACCTGTACTAGTAACAAGATGACTGGTTCAGCTGAAATGTCTGAAATTGTGTCTCCAATAATGGAGCCAAGGGAAGTAGGAACTTCACTTGTAGCATACCAGCTAGAGGTGCATGATGAAGTGACTAAGTTAGTGAATGTTGTTCTTGCAAGGGCCAAGGATATCTGGCCACTAGTACAATCAGGATTCGTGAATGAAGTAATGAGGACTTTGAGAAGTTGCAAGGAAGAGCTGGCAACATTCACTTCTGACTCACTTCCATCTGCGGGTGTTTTGCCCTTCACGAAGCAATATGTTCAGATAATGAAACTGCTTACAAGGGCATGGATGAACTTTCTGCCTTCAGTGCTTTTTCCTCCTTATGGAATGGGAGAATTAGACTTGGTATTAAGAAAGCTGGACACAAGGCTTAGAGATCTGAAGAGTACATTTATAAGATTGTCTAAAAGGGAGGAGTTGCATATCTTGGAGCTGATACTTGTGACCTGTGTGCTCAGATTGTCGAAAGTAGAAATTTGCTGCCATCTTCGAACCTTGAGAAAGCTCTCTAGTACGATGTCACAGGTTGAATCTCTCCTTAGAGATGGATCTCTTGAACCTTCCAGGTTTATAACTGAAGTTGAGAAGTTATCATCGGAAACCGGTACCTTTCCCAATGAAGGTTCCTGTAATCCCCGCCTTTTTCAAAGAGCACTTGAAAGCTTCTCCCTCAAGCAGCTTGTGTTGAGTGGTGGAAACAAGCACGTAAACGCAGAGCTGGATATACCCGACAACAGCTACGAAAATCCTCTCCGGTTTGTCGCAGGACTGCCCGTTGGCATACCCTGCCATATCACACTCCATAACGTTTTAGCCGAAAGTCGGCTGTGGCTGAAGATGACTGTAAATGAAGACGACGATTCAACTCGATTTGTGTTTTTGGATTTAAACCTTTTCGGAGGCTCCGAAGATATCCGGATCTTTACGTTTAGTCCACCCTTTTACAGAACCCCAAAAGCATTTTCTTTCACAATTAAGGTGTGTATCTATATGGAATGTTTGTCCGAGGTTGAGGATGTCTCCTCTGTCAAAAGTCGGGGCCCTAGACATGAAGTAACGTATCTTTGTCGAGAAAAGGATGTTTATCTTTCTATGAAGTAACTTATTTTACTCTGTTAATTGAAGAA

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT3G08800.1	1	SIEL\|SHORT-ROOT interacting embryonic lethal
Prunus persica	Prupe.6G285000.1.p	1	ARM repeat superfamily protein
Pyrus communis	PCP024315.1	1	-
Pyrus x bretschneideri	Pbr015933.1	1	-
Rosa multiflora	Rmu_sc0003578.1_g000001.1	1	-
Rubus occidentalis	Ro06_G05657	1	-
Fragaria vesca	mrna13794.1	1	ARM repeat superfamily protein
Vitis vinifera	GSVIVT01030267001	1	ARM repeat superfamily protein
Solanum lycopersicum	Solyc01g090260.2.1	1	ARM repeat superfamily protein
Populus trichocarpa	Potri.016G127500.1	1	ARM repeat superfamily protein
Nicotiana benthamiana	Niben101Scf02031g05009.1	1	Integrator complex subunit 4
Nicotiana benthamiana	Niben101Scf13346g00003.1	0.724	Integrator complex subunit 4
Zea mays	GRMZM2G136268_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005488	binding	molecular_function

KEGG

KO	Description	Enzyme
K13141	integrator complex subunit 4	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.38413
SRR5252888	dormant buds	no	dormant buds(0 month)	6.05636
SRR5252889	dormant buds	no	dormant buds(0 month)	5.47822
SRR5252886	dormant buds	no	dormant buds(1 months)	9.20397
SRR5252887	dormant buds	no	dormant buds(1 months)	6.7578
SRR5252884	dormant buds	no	dormant buds(2 months)	9.89783
SRR5252882	dormant buds	no	dormant buds(3 months)	8.73096
SRR5252883	dormant buds	no	dormant buds(3 months)	8.08027
SRR5252880	dormant buds	no	dormant buds(4 months)	6.86343
SRR5252881	dormant buds	no	dormant buds(4 months)	6.42572
SRR5252878	bud break	no	bud break	5.35005
SRR5252879	bud break	no	bud break	3.36182
SRR3744766	flower	no	mature	2.13133
SRR3744767	flower	no	mature	2.2942
SRR3744768	flower	no	mature	2.32708
SRR6308190	stigmas	no	open flowers	2.68106
SRR6308181	styles	no	open flowers	2.26766
SRR6308188	filaments	no	open flowers	2.10032
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	2.61877
SRR6308192	pollen	no	open flowers	4.70891
SRR6308191	petals	no	open flowers	2.00954
SRR6308194	sepals	no	open flowers	2.30598
SRR6308193	receptacles	no	open flowers	2.65671
SRR6308189	ovaries	no	open flowers	2.39283
SRR3384922	fruit	no	1 week after full bloom	1.53944
SRR3384921	fruit	no	2 week after full bloom	1.33308
SRR3384920	fruit	no	3 week after full bloom	0.773639
SRR3384919	fruit	no	4 week after full bloom	1.4541
SRR3384923	fruit	no	5 week after full bloom	1.05471
SRR3384918	fruit	no	6 week after full bloom	1.35675
SRR3384917	fruit	no	8 week after full bloom	1.13007
SRR3384916	fruit	no	10 week after full bloom	1.12551
SRR3384915	fruit	no	12 week after full bloom	1.38959
SRR3384914	fruit	no	14 week after full bloom	1.54425
SRR3384913	fruit	no	16 week after full bloom	1.25667
SRR3384912	fruit	no	18 week after full bloom	1.36553
SRR3384911	fruit	no	19 week after full bloom	1.04181
SRR3384910	fruit	no	20 week after full bloom	1.16529
SRR768128	whole fruit	no	25 days post anthesis	2.22802
SRR768129	whole fruit	no	35 days post anthesis	0.963849
SRR768130	whole fruit	no	60 days post anthesis	1.30522
SRR768131	whole fruit	no	87 days post anthesis	0.701749
SRR7343308	immature fruit flesh	no	immature	2.80884
SRR7343309	immature fruit flesh	no	immature	2.47171
SRR6320494	ripe fruit flesh	no	mature	1.11196
SRR5405143	ripe fruit peel	no	mature	3.95504
SRR6320572	ripe fruit peel	no	mature	3.87935
SRR7403504	fruit	uninfected	mature	1.64977
SRR7403506	fruit	uninfected	mature	1.54545
SRR7403507	fruit	uninfected	mature	1.62023
SRR7403500	fruit	infected with penicillium expansum	mature	2.49399
SRR7403501	fruit	infected with penicillium expansum	mature	2.62653
SRR7403508	fruit	infected with penicillium expansum	mature	3.0123
SRR7403502	fruit	infected with penicillium expansum	mature	2.1626
SRR7403503	fruit	infected with penicillium expansum	mature	2.89854
SRR7403505	fruit	infected with penicillium expansum	mature	2.2714
SRR1613973	Central seeds	no	20DAPF	1.90272
SRR1613974	Central seeds	no	20DAPF	2.05583
SRR1613975	Central seeds	no	20DAPF	2.04056
SRR1613976	Lateral seeds	no	20DAPF	1.64064
SRR1613977	Lateral seeds	no	20DAPF	2.2139
SRR1613978	Lateral seeds	no	20DAPF	1.9503
SRR3744786	stem	no	mature	4.13026
SRR3744787	stem	no	mature	4.55041
SRR3744772	stem	no	mature	4.0357
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.79048
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	2.83936
SRR1089478	leaf	Virus-free	plantlets	1.78172
SRR1089477	leaf	ASGV-infected	plantlets	1.88463
SRR767660	leaf	uninfected	fully developed	0.328763
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.994923
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	1.7153
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.83048
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	1.4669
SRR6308182	young leaf	no	immature leaves	3.36498
SRR3744769	leaf	no	mature	2.4926
SRR3744770	leaf	no	mature	2.62775
SRR3744771	leaf	no	mature	2.73233
SRR5405145	leaf	no	mature	1.91842
SRR6320561	leaf	no	mature	1.77395