Gene detail

Detail information of MD04G1186800 Annotation

Gene ID	Annotation
MD04G1186800	MuDR family transposase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0411	zinc finger SWIM domain-containing protein 3 MBD photosystem II assembly regulation of multicellular organism growth maltose metabolic process starch biosynthetic process leaf morphogenesis cell differentiation methyl-CpG binding cysteine-type endopeptidase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1186800	mRNA	Chr04	27761733	27765784	+

Sequences

CDS:

MD04G1186800

CTGGTGGGAAACCGAATAGCTACCCCTCTCTTCTCTCTCTTGGGGTTGAATTGTGTAGGTTACGTATGCGTGAACATCCCCAAATTTCAGAGCTGCGAGCCAAATTCCACGGTCAAAATCCCAACTTCGAATTGGGCATTGGAGACTCAGACGACAATCTCAGTTCCGAAAGATCATGGAGGTGAAGAGAGTCATAGCAATTTGTCAGTCGGGGGGTGAATTCTTTACAGAGAAAGATGGTACATTGTCATATAGGGGCAAAGATGCTCATGCTATTGACATTGATGACCAGATGAAGTTTGATGAGTTTAAATTGGAGGTCACAGAAATGTTTGGTTGCAGCTACAATAACATGGTCATCAAGTACTTCCTCCCTGGCAACAAGAAGACCCTGATTACTGTTTCCAATGACAAGGATCTCCAGCGCATGATCAAATTCCATGGTGATTTTGCAACCATTGATATTTATGTCATGGAGGAAGTAGCTCCTCCTGATGTCTCGAACATGCCTCCCAGTAGGTCGAGCAGAACAACTCTGTCAGAAACTGTGGTTCCAGTTGATGCATCTCTTGATGTCGTGGACTTTGTGGGTGATACCACTCAGCCTGATATCCCACTTGATGCTTCTCTTGATGTTGTCGATGGTGCCAGCCCTATTGATGCACATATTGATATACCCACCGAAATATCACCCATTTTTCCTCTTGTTGGCCCTAGTGGTGAGAAGCATGCTAAAGGTGCACACCAGTGGCAGAATGCTATTACGGGTGTGGGCCAAAGATTCAGCAGCGTTCATGAATTTCGTGAATCATTGCGCAAATATGCCATTGCGCATCAGTTCGCCTTTAGGTATAAGAAGAATGATAGTCATCGTGTGACTGTGAAGTGCAAGGCTGAAGGCTGCCCTTGGAGAATTCATGCATCAAGGTTGTCGACAACTCAGTTAATATGTATCAAGAAAATGAATCCAACACATTCCTGTGAAGGTGCTGTTGCAACTACAGGGCATCAGGCGACGAGGAGTTGGGTGGCCAGTATTATCAAGGAGAAGTTAAAATATATGCCCAACTATAAGCCCAAGGATATTGTGAACGATATCAAGCAGGAATATGGTATACAGCTAAACTACTTCCAGGCCTGGCGTGGGAAAGAAATAGCAAAGGAGCAGCTTCAGGGTTCGTACAAAGAGGCATATAATCAATTACCATTTTTCTGTGACAGGATAATGGAGACAAACCCTGGTAGTCTTGCTACTTTTACCACCAAGGAAGACTCCAGTTTCCATCGCCTCTTTGTCGCATTCCATGCCTCATTGTATGGTTTCCAGCAAGGTTGCAGGCCTCTCCTTTTCCTGGATAGCATTCCCTTAAAATCAAAATATCAAGGCACATTGTTGGCTGCAACAGCTGCTGACGGGGATGATGGGGTATTCCCTGTTGCTTTCACTGTGGTGGATGCAGAAACTGATGATAATTGGCATTGGTTTTTACTACAGTTGAAATCTGCATTGTCAATATCTTGTCCTGTGACATTTGTGGCAGACAGACAGAAGGGATTGAAGGAATCAATTGCGGAAATATTTAAAGACTCATATCATGGCTATTGCCTGCGATATTTGACCGAGCAACTTATCAGGGACTTGAAAGGGCAGTTTTCTCATGAGGTCAAGCGGCTGATGATTGAGGATTTTTATGGTGCTGCTTATGCACATAGGCCTGAAAACTTCCAAAGTTGTCTTGAAAGCATAAAAAGCATCTCATTGGAGGCTTACAATTGGATCATACAAAGTGAGCCCCAGAAGTGGGCGAATTCATTCTTTCAAGGTGCTAGATATAACCATATGACATCCAACTTTGGTGAGCTGTTCTATAGTTGGGCATCAGATGCACACGAGTTACCAATAACACAGATGGTTGATGTGATCAGGGGTAAGATTATGGAGTTGATCTACACAAGAAGGGAAGGATCTAATGAATGGTTGACAAGGCTTACTCCAACCATGGAGGAAAAGCTAGAAAAGGAAACTCAGAACATCGGAAACCTCCAAGTGCTATTGTTGACTGGTAGCAGATTTGAGGTTCATGGTGACACCACTGAAGTTGTTGATGTTGATCGCTGGGACTGTAGTTGTAGAGGGTGGCAGATAACTGGTTTACCATGCTGTCATGCAATTGCTGTCATTCGTTGCATGGGCAGGAGCCCATATGATTATTGTTCAAGATACTTTACCACTGAGAGCTATAGATTGACATACTCAGAACCAATATATCCTGTTCCAAATGTAGACATGCCTGTGACGAAGGCTTCTTCTCAAGTACTAGTGACTGTAACGCCTCCACCCACCCGGCGTCCACCAGGCAGGCCTACTACTAAGAAATATGGATCACAAGATATGGCTAAGCGTCAACTCCAGTGCAGCAGATGCAAGGGTCTTGGGCACAACAAGTCCACTTGTAAAGAGTGATTGTAGAGTATTAGATGCCGGGATTGCATCCGAGAGGGCGATGGCAAGGGCATCATCTGTACTAGAAGCAGCTCAAATAGATAGTGGGATGTGTTCCCGAATGTATGTGTTAGTAGACATGCTTATGTAAATTATTCTTCGTTTTCATAGTTGTATTGCTAACCAGGATATTTGGTAGTTTAACTTTGGTAAATGAATGTGATTTACGTTAATTTACTAAGGTATTAGGTGGCGGATGTTGTTAGAGTTACTTGAAGTTGAAGGTGCCATGGAAGTTGGAATTGGAATTTGGCATCCAATCATTTTGTAGGTTTGGTCTTTTTGTCTTGTAAATTATCCTTTTGGTCAGCTGGCCAATGTTTAATTCATTTATACGAAGACGTT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G64260.1	1	MuDR family transposase
Arabidopsis thaliana	AT1G49920.1	1	MuDR family transposase
Prunus persica	Prupe.6G305400.2.p	1	MuDR family transposase
Prunus persica	Prupe.6G305400.4.p	1	MuDR family transposase
Prunus persica	Prupe.6G305400.3.p	1	MuDR family transposase
Prunus persica	Prupe.6G305400.1.p	1	MuDR family transposase
Pyrus communis	PCP022818.1	1	-
Rubus occidentalis	Ro06_G08372	1	-
Fragaria vesca	mrna22919.1	1	MuDR family transposase
Vitis vinifera	GSVIVT01014078001	1	MuDR family transposase
Vitis vinifera	GSVIVT01023989001	1	MuDR family transposase
Populus trichocarpa	Potri.013G002600.2	1	MuDR family transposase
Oryza sativa	LOC_Os02g09900.1	1	"transposon protein, putative, unclassified, expressed"
Oryza sativa	LOC_Os06g42640.3	1	"transposon protein, putative, unclassified, expressed"
Oryza sativa	LOC_Os10g01550.1	1	"transposon protein, putative, unclassified, expressed"
Zea mays	GRMZM2G130905_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0008270	zinc ion binding	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K17604	zinc finger SWIM domain-containing protein 3	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00564.20	PB1	2	50	1.00E-05
PF10551.5	MULE	361	443	1.10E-17
PF04434.13	SWIM	604	631	9.60E-09

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	3.78961
SRR5252888	dormant buds	no	dormant buds(0 month)	18.1515
SRR5252889	dormant buds	no	dormant buds(0 month)	15.3488
SRR5252886	dormant buds	no	dormant buds(1 months)	11.9559
SRR5252887	dormant buds	no	dormant buds(1 months)	11.0806
SRR5252884	dormant buds	no	dormant buds(2 months)	11.4751
SRR5252882	dormant buds	no	dormant buds(3 months)	10.6003
SRR5252883	dormant buds	no	dormant buds(3 months)	13.0359
SRR5252880	dormant buds	no	dormant buds(4 months)	14.1459
SRR5252881	dormant buds	no	dormant buds(4 months)	11.3063
SRR5252878	bud break	no	bud break	16.2573
SRR5252879	bud break	no	bud break	10.4827
SRR3744766	flower	no	mature	9.07595
SRR3744767	flower	no	mature	8.73772
SRR3744768	flower	no	mature	8.18065
SRR6308190	stigmas	no	open flowers	4.99428
SRR6308181	styles	no	open flowers	3.54931
SRR6308188	filaments	no	open flowers	2.50259
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	3.81658
SRR6308192	pollen	no	open flowers	5.50298
SRR6308191	petals	no	open flowers	2.94571
SRR6308194	sepals	no	open flowers	3.06202
SRR6308193	receptacles	no	open flowers	4.47062
SRR6308189	ovaries	no	open flowers	4.77945
SRR3384922	fruit	no	1 week after full bloom	1.89953
SRR3384921	fruit	no	2 week after full bloom	3.00746
SRR3384920	fruit	no	3 week after full bloom	3.83707
SRR3384919	fruit	no	4 week after full bloom	2.84589
SRR3384923	fruit	no	5 week after full bloom	3.29994
SRR3384918	fruit	no	6 week after full bloom	3.54137
SRR3384917	fruit	no	8 week after full bloom	3.89185
SRR3384916	fruit	no	10 week after full bloom	3.12272
SRR3384915	fruit	no	12 week after full bloom	3.75342
SRR3384914	fruit	no	14 week after full bloom	2.61645
SRR3384913	fruit	no	16 week after full bloom	2.81377
SRR3384912	fruit	no	18 week after full bloom	2.51483
SRR3384911	fruit	no	19 week after full bloom	2.17082
SRR3384910	fruit	no	20 week after full bloom	2.90364
SRR768128	whole fruit	no	25 days post anthesis	5.98372
SRR768129	whole fruit	no	35 days post anthesis	4.43074
SRR768130	whole fruit	no	60 days post anthesis	4.59563
SRR768131	whole fruit	no	87 days post anthesis	5.59153
SRR7343308	immature fruit flesh	no	immature	5.85764
SRR7343309	immature fruit flesh	no	immature	6.00881
SRR6320494	ripe fruit flesh	no	mature	7.07925
SRR5405143	ripe fruit peel	no	mature	6.98775
SRR6320572	ripe fruit peel	no	mature	4.63044
SRR7403504	fruit	uninfected	mature	4.96582
SRR7403506	fruit	uninfected	mature	5.01252
SRR7403507	fruit	uninfected	mature	4.68608
SRR7403500	fruit	infected with penicillium expansum	mature	4.03367
SRR7403501	fruit	infected with penicillium expansum	mature	2.23714
SRR7403508	fruit	infected with penicillium expansum	mature	3.26907
SRR7403502	fruit	infected with penicillium expansum	mature	3.03296
SRR7403503	fruit	infected with penicillium expansum	mature	3.53813
SRR7403505	fruit	infected with penicillium expansum	mature	2.94352
SRR1613973	Central seeds	no	20DAPF	2.47902
SRR1613974	Central seeds	no	20DAPF	2.81136
SRR1613975	Central seeds	no	20DAPF	2.46274
SRR1613976	Lateral seeds	no	20DAPF	2.78623
SRR1613977	Lateral seeds	no	20DAPF	2.42117
SRR1613978	Lateral seeds	no	20DAPF	2.95937
SRR3744786	stem	no	mature	9.98261
SRR3744787	stem	no	mature	9.89648
SRR3744772	stem	no	mature	9.20848
SRX765691	seedling shoot apex	no	4-6 week old seedling	6.31882
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	8.90815
SRR1089478	leaf	Virus-free	plantlets	6.72634
SRR1089477	leaf	ASGV-infected	plantlets	7.08399
SRR767660	leaf	uninfected	fully developed	6.82624
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	5.4502
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	4.59486
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.716812
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.53353
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.16279
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	2.68851
SRR6308182	young leaf	no	immature leaves	5.73788
SRR3744769	leaf	no	mature	9.46575
SRR3744770	leaf	no	mature	9.20652
SRR3744771	leaf	no	mature	9.68165
SRR5405145	leaf	no	mature	7.18964
SRR6320561	leaf	no	mature	6.89927