Gene detail

Detail information of MD04G1187400 Annotation

Gene ID	Annotation
MD04G1187400	Protein kinase superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1187400	mRNA	Chr04	27807205	27811523	+

Sequences

CDS:

MD04G1187400

TCTCAGTACCTTTAAACATCACAGAATTCCATGCATCCCTTTTACTGTTTGTAAGGAAACTCTCAGCAGTGGGTGGGTCTTAAAAACTCCCCACCTGACCTACCACTGATAACTCCACCCCTTCTTCTTATATCCCCCATCCACTCACAGAGATCACTTTTTTTCCATGACCCTGTACATTTTTGCACAGGCACAGGAGTTTTCTGGTTTTTTTTGGGTGTGGGTTTTTGAGATGGATTAGTTTTGGTGCCTGAAAGCTCCTTCCCAACTTAGATTCAGAAACACATTTGGCCCACAGTGAAAACCCACAAAGGGATTTGAGTTTACTGCTTATATTTGTTTTTTTTATTTAAATTAATTTGATTGAAAAGTGGGATCTTTTGGGTTTCTTGAGAGGTTTTCTTGGTGTATGTTTCTGGGTTTTTCTTAGTTCTGGTTAGAGATCTGGAATTGTGCCTTATTTGGGATAAAGAATGTTGAAGGGGTTTCAAAGATCTGGTTTTTCAAGATTGCTCTTTTGAGTTCCATCTCAAAGAGGCTTGTTGGTAGCTGATAGAATGGCCTCTGATCTCAAATCAGAGTTATCCAAGGAAACTCCCATCTTTAATCTAAAAGTCTGGGAAGTAATTGGAATTGCTGTTGCATTGTTTATCATTGCTATCCTTACTGTGCTATCAATGTGTCTTACTTGGCGTAAGAAATCAAGAAAAGCTCGTGACAGGATACCCCTTAGTCAAATCCCAACTGTCTCGAAAGAGATTAAGGAAGTGCGGGTGGAGCAAGTATCCGCTAGGGAGTTTGCTCCTCGTGATGGAATTCTTCTCACCATTCACGACAAATCTAGTGACAGAGAATCCGATAAGATCATGGTCCATTTGGATATGGGAAAATCAAATAATGGAGAAAATAGCAGCCAGTCAGGTTCGTTTAATCGTCTAGAAAATGATGGTGTCCTGTCCCATTCTGGAGAAGAAGGGAGTTCCAGCACGGTTACTGTGTATAAGGCTTCCTCATCGTATCCAATAACTGCACCGTCTCCTCTGGTTGGTCTGCCTGAATTCTCACATTTGGGTTGGGGGCACTGGTTTACATTAAGGGACCTGGAGCTTGCAACAAACCGGTTTGCAAAGGATAATGTCCTTGGTGAGGGTGGATATGGAGTTGTTTACCGGGGACATCTCATCAATGGGACTCCAGTGGCCGTTAAAAAGATCCTAAACAACCTAGGCCAAGCCGAGAAAGAATTCAGGGTGGAAGTTGAAGCAATTGGCCATGTGCGCCACAAGAATTTGGTTCGCCTCCTGGGATACTGCGTTGAAGGGACTCATAGGATTTTGGTCTACGAGTATGTCAACAATGGAAACTTGGAGCAGTGGCTTCACGGAGCAATGCGCCACCATGGATATCTCACTTGGGAAGCACGCATAAAGGTTCTCCTTGGGACCGCAAAAGCTCTTGCCTATTTACATGAGGCCATTGAACCAAAAGTGATACACCGAGACATTAAGTCAAGCAATATATTGATTGATGAAGACTTCAATTCCAAGGTATCTGATTTTGGGCTGGCCAAGCTGCTGGGTGCAGGAACTAGTCATGTGACAACGCGTGTTATGGGAACCTTTGGGTATGTGGCTCCTGAATATGCTAATACCGGACTATTGAATGAAAAGAGCGATGTATATAGCTTTGGGGTTTTGCTCTTAGAAGCAATTACTGGAAGAGACCCTGTGGACTATGGTCGCCCTGCTCATGAGGTAAATCTGGTTGATTGGCTAAAAATGATGGTTGGAAGCAGAAGATCCGAAGAAGTGGTAGACCCAAACATTGAGGTGAGACCATCGACAAGAGCCCTAAAACGAGCCCTCTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCCAAGATGAGCCAAGTTGTCCGTATGCTCGAATCTGAGGAATATCCTATACCAAGAGAGGATCGAAGGCACCGAAGAACTGAAGGAGGTAGTGTGGAAATTGATTCCCAGCGTGAAAATTCAGACACTGATCGGAGTGATTATCCGGGTTCAAGATCAGAGAGCAAAGGCTACCAACGGACGTAATAACCCAGTGATTCGTTTAAGGATGTCGGAAATACAGAAAGTGAGGGTAATTCTTAAATTTTTTTTTTTCTCTTCTCGTAAATTCTTGGGTTTGTCTGTCTGATACTCTGAGCTGATGCTGTTAGGACATATGTGGTAGAAGGGATCGATGGGGAGGAGAGATGATCCTTGCATCCCTTTTCCCCCCTCCTTTTTTCTCTTTGTTTTTATTATTTTTTGTAGATGGAGAAATGTATTGTGTATGAAAGTGGTGGTGTTTGTGAAGAACCCAAAATAATAGGGGCTTTGTTATGTACAGAATGATTTGCTCTTCAAATTTGGTGGATGAAATTGCTCCCTTTTAGTTTAGACAACAAGGCTTCCGAGTCTCGTCCTCTTGGTCACCTGGTGACTCGTATACATGGTCACTTACAGTTTAATTTGATATTAACGGGTGAGATTTAGACAGTAAAAGCACGTCCATGTATTCTCCACATTTGATATCAAATTCGACGGTGAGTGACTGCTTTCTGTGGTCACAAGACAATCAATAAAACATCTCT

Protein:

Gene family

Gene family	Subfamily
Protein Kinases Family	PPC:1.6.3

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G306000.2.p	1	Protein kinase superfamily protein
Prunus persica	Prupe.6G306000.3.p	1	Protein kinase superfamily protein
Prunus persica	Prupe.6G306000.1.p	1	Protein kinase superfamily protein
Pyrus x bretschneideri	Pbr006705.1	1	-
Rosa multiflora	Rmu_sc0007338.1_g000007.1	1	-
Rubus occidentalis	Ro06_G08364	1	-
Fragaria vesca	mrna22925.1	1	Protein kinase superfamily protein
Vitis vinifera	GSVIVT01031315001	1	Protein kinase superfamily protein
Populus trichocarpa	Potri.005G003300.1	1	Protein kinase superfamily protein
Nicotiana benthamiana	Niben101Scf00402g02004.1	1	Receptor-like protein kinase
Nicotiana benthamiana	Niben101Scf01763g00004.1	0.68	Receptor-like protein kinase
Oryza sativa	LOC_Os01g21960.1	1	"serine/threonine-protein kinase, putative, expressed"
Zea mays	GRMZM2G034855_P01	1	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1;

Gene Ontology

GO term	Description	Category
GO:0004674	protein serine/threonine kinase activity	molecular_function
GO:0004713	protein tyrosine kinase activity	molecular_function
GO:0005524	ATP binding	molecular_function
GO:0006468	protein phosphorylation	biological_process

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.21	Pkinase	190	458	9.30E-48

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	9.10773
SRR5252888	dormant buds	no	dormant buds(0 month)	14.9943
SRR5252889	dormant buds	no	dormant buds(0 month)	11.0505
SRR5252886	dormant buds	no	dormant buds(1 months)	20.8282
SRR5252887	dormant buds	no	dormant buds(1 months)	20.6139
SRR5252884	dormant buds	no	dormant buds(2 months)	18.4643
SRR5252882	dormant buds	no	dormant buds(3 months)	20.2322
SRR5252883	dormant buds	no	dormant buds(3 months)	26.3552
SRR5252880	dormant buds	no	dormant buds(4 months)	19.5999
SRR5252881	dormant buds	no	dormant buds(4 months)	24.8943
SRR5252878	bud break	no	bud break	12.1194
SRR5252879	bud break	no	bud break	17.9431
SRR3744766	flower	no	mature	15.9815
SRR3744767	flower	no	mature	15.8112
SRR3744768	flower	no	mature	15.2853
SRR6308190	stigmas	no	open flowers	16.7091
SRR6308181	styles	no	open flowers	14.7504
SRR6308188	filaments	no	open flowers	26.6637
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	31.6398
SRR6308192	pollen	no	open flowers	3.58998
SRR6308191	petals	no	open flowers	11.9928
SRR6308194	sepals	no	open flowers	2.82073
SRR6308193	receptacles	no	open flowers	9.8991
SRR6308189	ovaries	no	open flowers	17.3775
SRR3384922	fruit	no	1 week after full bloom	7.15628
SRR3384921	fruit	no	2 week after full bloom	6.17695
SRR3384920	fruit	no	3 week after full bloom	4.88032
SRR3384919	fruit	no	4 week after full bloom	7.52354
SRR3384923	fruit	no	5 week after full bloom	7.67142
SRR3384918	fruit	no	6 week after full bloom	9.37373
SRR3384917	fruit	no	8 week after full bloom	9.46498
SRR3384916	fruit	no	10 week after full bloom	10.4083
SRR3384915	fruit	no	12 week after full bloom	14.4844
SRR3384914	fruit	no	14 week after full bloom	12.5007
SRR3384913	fruit	no	16 week after full bloom	13.3753
SRR3384912	fruit	no	18 week after full bloom	15.8012
SRR3384911	fruit	no	19 week after full bloom	13.515
SRR3384910	fruit	no	20 week after full bloom	16.3351
SRR768128	whole fruit	no	25 days post anthesis	6.95526
SRR768129	whole fruit	no	35 days post anthesis	12.3759
SRR768130	whole fruit	no	60 days post anthesis	18.3525
SRR768131	whole fruit	no	87 days post anthesis	17.3707
SRR7343308	immature fruit flesh	no	immature	5.281
SRR7343309	immature fruit flesh	no	immature	6.90173
SRR6320494	ripe fruit flesh	no	mature	9.44868
SRR5405143	ripe fruit peel	no	mature	13.0813
SRR6320572	ripe fruit peel	no	mature	7.01543
SRR7403504	fruit	uninfected	mature	17.9381
SRR7403506	fruit	uninfected	mature	16.3222
SRR7403507	fruit	uninfected	mature	16.4761
SRR7403500	fruit	infected with penicillium expansum	mature	2.21615
SRR7403501	fruit	infected with penicillium expansum	mature	1.71013
SRR7403508	fruit	infected with penicillium expansum	mature	1.84923
SRR7403502	fruit	infected with penicillium expansum	mature	2.4562
SRR7403503	fruit	infected with penicillium expansum	mature	2.62054
SRR7403505	fruit	infected with penicillium expansum	mature	2.94443
SRR1613973	Central seeds	no	20DAPF	66.8978
SRR1613974	Central seeds	no	20DAPF	59.9483
SRR1613975	Central seeds	no	20DAPF	53.4327
SRR1613976	Lateral seeds	no	20DAPF	52.9021
SRR1613977	Lateral seeds	no	20DAPF	51.0421
SRR1613978	Lateral seeds	no	20DAPF	59.8914
SRR3744786	stem	no	mature	13.1361
SRR3744787	stem	no	mature	13.3097
SRR3744772	stem	no	mature	15.0229
SRX765691	seedling shoot apex	no	4-6 week old seedling	9.92647
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	11.3626
SRR1089478	leaf	Virus-free	plantlets	7.67251
SRR1089477	leaf	ASGV-infected	plantlets	7.88918
SRR767660	leaf	uninfected	fully developed	4.88893
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	2.48415
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.60841
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	5.45711
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.87968
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	10.4436
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	10.0799
SRR6308182	young leaf	no	immature leaves	12.1336
SRR3744769	leaf	no	mature	8.26292
SRR3744770	leaf	no	mature	7.83851
SRR3744771	leaf	no	mature	8.24486
SRR5405145	leaf	no	mature	5.1789
SRR6320561	leaf	no	mature	5.62613