Gene detail

Detail information of MD04G1192900 Annotation

Gene ID	Annotation
MD04G1192900	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1192900	mRNA	Chr04	28197887	28201344	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Transcription Factors Family	ARID

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus x bretschneideri	Pbr028063.1	1	-

Gene Ontology

GO term	Description	Category
GO:0005622	intracellular	cellular component
GO:0003677	DNA binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.17	ARID	32	114	4.00E-10
PF09011.6	HMG_box_2	203	270	3.70E-08

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.173904
SRR5252888	dormant buds	no	dormant buds(0 month)	0.39458
SRR5252889	dormant buds	no	dormant buds(0 month)	1.57445
SRR5252886	dormant buds	no	dormant buds(1 months)	1.67078
SRR5252887	dormant buds	no	dormant buds(1 months)	2.84114
SRR5252884	dormant buds	no	dormant buds(2 months)	0.66169
SRR5252882	dormant buds	no	dormant buds(3 months)	0.189611
SRR5252883	dormant buds	no	dormant buds(3 months)	0.671495
SRR5252880	dormant buds	no	dormant buds(4 months)	1.1354
SRR5252881	dormant buds	no	dormant buds(4 months)	0.735145
SRR5252878	bud break	no	bud break	0.376964
SRR5252879	bud break	no	bud break	0.418012
SRR3744766	flower	no	mature	0.612919
SRR3744767	flower	no	mature	0.50142
SRR3744768	flower	no	mature	0.451123
SRR6308190	stigmas	no	open flowers	1.43414
SRR6308181	styles	no	open flowers	1.6885
SRR6308188	filaments	no	open flowers	0.38984
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.704291
SRR6308192	pollen	no	open flowers	3.43087
SRR6308191	petals	no	open flowers	0.333348
SRR6308194	sepals	no	open flowers	0.323053
SRR6308193	receptacles	no	open flowers	0.708529
SRR6308189	ovaries	no	open flowers	0.785321
SRR3384922	fruit	no	1 week after full bloom	0.710022
SRR3384921	fruit	no	2 week after full bloom	1.00873
SRR3384920	fruit	no	3 week after full bloom	0.169181
SRR3384919	fruit	no	4 week after full bloom	0.742419
SRR3384923	fruit	no	5 week after full bloom	0.743194
SRR3384918	fruit	no	6 week after full bloom	3.01975
SRR3384917	fruit	no	8 week after full bloom	2.74723
SRR3384916	fruit	no	10 week after full bloom	7.64206
SRR3384915	fruit	no	12 week after full bloom	10.1436
SRR3384914	fruit	no	14 week after full bloom	10.7726
SRR3384913	fruit	no	16 week after full bloom	12.3213
SRR3384912	fruit	no	18 week after full bloom	9.59477
SRR3384911	fruit	no	19 week after full bloom	5.75747
SRR3384910	fruit	no	20 week after full bloom	2.66042
SRR768128	whole fruit	no	25 days post anthesis	0.908631
SRR768129	whole fruit	no	35 days post anthesis	1.05651
SRR768130	whole fruit	no	60 days post anthesis	3.54267
SRR768131	whole fruit	no	87 days post anthesis	12.9626
SRR7343308	immature fruit flesh	no	immature	1.83467
SRR7343309	immature fruit flesh	no	immature	0.784465
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.14617
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.221866
SRR7403506	fruit	uninfected	mature	0.156246
SRR7403507	fruit	uninfected	mature	0.185516
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0.0588591
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.755745
SRR1613974	Central seeds	no	20DAPF	1.29348
SRR1613975	Central seeds	no	20DAPF	1.5706
SRR1613976	Lateral seeds	no	20DAPF	1.40491
SRR1613977	Lateral seeds	no	20DAPF	0.762277
SRR1613978	Lateral seeds	no	20DAPF	0.8088
SRR3744786	stem	no	mature	0.305122
SRR3744787	stem	no	mature	0.583507
SRR3744772	stem	no	mature	0.521778
SRX765691	seedling shoot apex	no	4-6 week old seedling	2.08681
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.472188
SRR1089478	leaf	Virus-free	plantlets	0.341605
SRR1089477	leaf	ASGV-infected	plantlets	0.52996
SRR767660	leaf	uninfected	fully developed	0.519845
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.501981
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.11918
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.112823
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.65614
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.662784
SRR6308182	young leaf	no	immature leaves	0.378707
SRR3744769	leaf	no	mature	0.353615
SRR3744770	leaf	no	mature	0.240541
SRR3744771	leaf	no	mature	0.365932
SRR5405145	leaf	no	mature	0.151935
SRR6320561	leaf	no	mature	1.23223