Gene detail

Detail information of MD04G1194800 Annotation

Gene ID	Annotation
MD04G1194800	secretion-associated RAS super family 2

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0336	GTG cytochrome c oxidase assembly factor 14 transcription elongation factor SPT4 GTP-binding protein SAR1 [EC:3.6.5.-]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1194800	mRNA	Chr04	28387537	28390134	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.6G314700.1.p	1	secretion-associated RAS super family 2
Pyrus communis	PCP027371.1	1	-
Pyrus communis	PCP042784.1	1	-
Pyrus x bretschneideri	Pbr016418.1	1	-
Pyrus x bretschneideri	Pbr028925.1	1	-
Rosa multiflora	Rmu_sc0019791.1_g000003.1	1	-
Rosa multiflora	Rmu_sc0000133.1_g000014.1	1	-
Rubus occidentalis	Ro06_G23809	1	-
Fragaria vesca	mrna31570.1	1	secretion-associated RAS super family 2
Vitis vinifera	GSVIVT01028107001	1	secretion-associated RAS super family 2
Populus trichocarpa	Potri.010G141900.1	1	secretion-associated RAS super family 2
Oryza sativa	LOC_Os06g12090.1	1	"miro, putative, expressed"
Oryza sativa	LOC_Os01g23620.1	1	"miro, putative, expressed"
Oryza sativa	LOC_Os12g37360.1	1	"miro, putative, expressed"
Zea mays	GRMZM2G038356_P01	1	-
Zea mays	GRMZM2G086636_P01	1	GTP-binding protein SAR1A

Gene Ontology

GO term	Description	Category
GO:0007264	small GTPase mediated signal transduction	biological_process
GO:0006886	intracellular protein transport	biological_process
GO:0005525	GTP binding	molecular_function
GO:0005622	intracellular	cellular component

KEGG

KO	Description	Enzyme
K07953	GTP-binding protein SAR1	EC:3.6.5.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00025.17	Arf	8	192	2.90E-65

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	64.0763
SRR5252888	dormant buds	no	dormant buds(0 month)	16.0623
SRR5252889	dormant buds	no	dormant buds(0 month)	14.2656
SRR5252886	dormant buds	no	dormant buds(1 months)	20.1773
SRR5252887	dormant buds	no	dormant buds(1 months)	21.2035
SRR5252884	dormant buds	no	dormant buds(2 months)	23.0877
SRR5252882	dormant buds	no	dormant buds(3 months)	21.2261
SRR5252883	dormant buds	no	dormant buds(3 months)	25.8629
SRR5252880	dormant buds	no	dormant buds(4 months)	18.1025
SRR5252881	dormant buds	no	dormant buds(4 months)	19.5587
SRR5252878	bud break	no	bud break	11.8926
SRR5252879	bud break	no	bud break	25.3116
SRR3744766	flower	no	mature	26.64
SRR3744767	flower	no	mature	27.1301
SRR3744768	flower	no	mature	28.1817
SRR6308190	stigmas	no	open flowers	21.9369
SRR6308181	styles	no	open flowers	22.3309
SRR6308188	filaments	no	open flowers	34.4456
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	53.1114
SRR6308192	pollen	no	open flowers	196.674
SRR6308191	petals	no	open flowers	32.3648
SRR6308194	sepals	no	open flowers	18.5984
SRR6308193	receptacles	no	open flowers	24.3718
SRR6308189	ovaries	no	open flowers	23.3501
SRR3384922	fruit	no	1 week after full bloom	40.833
SRR3384921	fruit	no	2 week after full bloom	43.0257
SRR3384920	fruit	no	3 week after full bloom	39.693
SRR3384919	fruit	no	4 week after full bloom	57.9092
SRR3384923	fruit	no	5 week after full bloom	48.7924
SRR3384918	fruit	no	6 week after full bloom	45.8107
SRR3384917	fruit	no	8 week after full bloom	43.1605
SRR3384916	fruit	no	10 week after full bloom	41.7754
SRR3384915	fruit	no	12 week after full bloom	56.7163
SRR3384914	fruit	no	14 week after full bloom	37.1544
SRR3384913	fruit	no	16 week after full bloom	47.1773
SRR3384912	fruit	no	18 week after full bloom	41.6691
SRR3384911	fruit	no	19 week after full bloom	52.5509
SRR3384910	fruit	no	20 week after full bloom	41.522
SRR768128	whole fruit	no	25 days post anthesis	28.0745
SRR768129	whole fruit	no	35 days post anthesis	56.1844
SRR768130	whole fruit	no	60 days post anthesis	33.5283
SRR768131	whole fruit	no	87 days post anthesis	24.4859
SRR7343308	immature fruit flesh	no	immature	10.6869
SRR7343309	immature fruit flesh	no	immature	16.544
SRR6320494	ripe fruit flesh	no	mature	18.7692
SRR5405143	ripe fruit peel	no	mature	17.3736
SRR6320572	ripe fruit peel	no	mature	20.933
SRR7403504	fruit	uninfected	mature	20.1193
SRR7403506	fruit	uninfected	mature	19.4027
SRR7403507	fruit	uninfected	mature	21.8447
SRR7403500	fruit	infected with penicillium expansum	mature	13.1938
SRR7403501	fruit	infected with penicillium expansum	mature	16.892
SRR7403508	fruit	infected with penicillium expansum	mature	15.36
SRR7403502	fruit	infected with penicillium expansum	mature	15.727
SRR7403503	fruit	infected with penicillium expansum	mature	15.2954
SRR7403505	fruit	infected with penicillium expansum	mature	12.4598
SRR1613973	Central seeds	no	20DAPF	48.1922
SRR1613974	Central seeds	no	20DAPF	46.2644
SRR1613975	Central seeds	no	20DAPF	49.7036
SRR1613976	Lateral seeds	no	20DAPF	41.4807
SRR1613977	Lateral seeds	no	20DAPF	50.9878
SRR1613978	Lateral seeds	no	20DAPF	51.4155
SRR3744786	stem	no	mature	13.0741
SRR3744787	stem	no	mature	13.4467
SRR3744772	stem	no	mature	11.4118
SRX765691	seedling shoot apex	no	4-6 week old seedling	16.4721
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	16.5872
SRR1089478	leaf	Virus-free	plantlets	7.08178
SRR1089477	leaf	ASGV-infected	plantlets	6.83309
SRR767660	leaf	uninfected	fully developed	14.1804
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	17.8621
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	38.4558
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	11.1191
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	13.4282
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	14.0662
SRR6308182	young leaf	no	immature leaves	25.6555
SRR3744769	leaf	no	mature	14.2721
SRR3744770	leaf	no	mature	14.6536
SRR3744771	leaf	no	mature	14.7774
SRR5405145	leaf	no	mature	7.71214
SRR6320561	leaf	no	mature	18.4787