Gene detail

Detail information of MD04G1206400 Annotation

Gene ID	Annotation
MD04G1206400	seryl-tRNA synthetase / serine--tRNA ligase

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1206400	mRNA	Chr04	29215321	29219010	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G27470.1	1	seryl-tRNA synthetase / serine--tRNA ligase
Prunus persica	Prupe.6G327000.1.p	1	seryl-tRNA synthetase / serine--tRNA ligase
Pyrus communis	PCP003555.1	1	-
Rosa multiflora	Rmu_sc0001792.1_g000036.1	1	-
Rubus occidentalis	Ro06_G02879	1	-
Fragaria vesca	mrna22561.1	1	seryl-tRNA synthetase / serine--tRNA ligase
Vitis vinifera	GSVIVT01000041001	1	seryl-tRNA synthetase / serine--tRNA ligase
Populus trichocarpa	Potri.005G094400.1	1	seryl-tRNA synthetase / serine--tRNA ligase
Nicotiana benthamiana	Niben101Scf10053g00024.1	1	Serine--tRNA ligase
Nicotiana benthamiana	Niben101Scf00370g04027.1	0.86	Serine--tRNA ligase
Oryza sativa	LOC_Os01g37837.3	1	"seryl-tRNA synthetase, putative, expressed"
Oryza sativa	LOC_Os03g10190.1	1	"seryl-tRNA synthetase, putative, expressed"
Zea mays	GRMZM2G172101_P01	1	seryl-tRNA synthetase / serine--tRNA ligase

Gene Ontology

GO term	Description	Category
GO:0006434	seryl-tRNA aminoacylation	biological_process
GO:0004828	serine-tRNA ligase activity	molecular_function
GO:0005737	cytoplasm	cellular component
GO:0005524	ATP binding	molecular_function

KEGG

KO	Description	Enzyme
K01875	seryl-tRNA synthetase	EC:6.1.1.11

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02403.18	Seryl_tRNA_N	1	112	1.90E-24
PF00587.21	tRNA-synt_2b	221	408	1.50E-36

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	25.5707
SRR5252888	dormant buds	no	dormant buds(0 month)	34.4747
SRR5252889	dormant buds	no	dormant buds(0 month)	30.887
SRR5252886	dormant buds	no	dormant buds(1 months)	27.915
SRR5252887	dormant buds	no	dormant buds(1 months)	30.4167
SRR5252884	dormant buds	no	dormant buds(2 months)	23.1467
SRR5252882	dormant buds	no	dormant buds(3 months)	22.234
SRR5252883	dormant buds	no	dormant buds(3 months)	24.8215
SRR5252880	dormant buds	no	dormant buds(4 months)	35.5687
SRR5252881	dormant buds	no	dormant buds(4 months)	39.842
SRR5252878	bud break	no	bud break	34.4524
SRR5252879	bud break	no	bud break	46.914
SRR3744766	flower	no	mature	16.5906
SRR3744767	flower	no	mature	15.2544
SRR3744768	flower	no	mature	16.4508
SRR6308190	stigmas	no	open flowers	19.5672
SRR6308181	styles	no	open flowers	19.2117
SRR6308188	filaments	no	open flowers	25.4955
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	8.65256
SRR6308192	pollen	no	open flowers	11.8122
SRR6308191	petals	no	open flowers	24.467
SRR6308194	sepals	no	open flowers	25.8429
SRR6308193	receptacles	no	open flowers	41.5153
SRR6308189	ovaries	no	open flowers	23.7736
SRR3384922	fruit	no	1 week after full bloom	19.6926
SRR3384921	fruit	no	2 week after full bloom	17.837
SRR3384920	fruit	no	3 week after full bloom	14.0039
SRR3384919	fruit	no	4 week after full bloom	16.5313
SRR3384923	fruit	no	5 week after full bloom	15.2512
SRR3384918	fruit	no	6 week after full bloom	15.8364
SRR3384917	fruit	no	8 week after full bloom	12.2214
SRR3384916	fruit	no	10 week after full bloom	16.1888
SRR3384915	fruit	no	12 week after full bloom	21.1068
SRR3384914	fruit	no	14 week after full bloom	20.2659
SRR3384913	fruit	no	16 week after full bloom	14.1652
SRR3384912	fruit	no	18 week after full bloom	19.6288
SRR3384911	fruit	no	19 week after full bloom	15.1913
SRR3384910	fruit	no	20 week after full bloom	20.8151
SRR768128	whole fruit	no	25 days post anthesis	25.548
SRR768129	whole fruit	no	35 days post anthesis	20.1649
SRR768130	whole fruit	no	60 days post anthesis	16.0561
SRR768131	whole fruit	no	87 days post anthesis	18.6391
SRR7343308	immature fruit flesh	no	immature	18.3842
SRR7343309	immature fruit flesh	no	immature	15.9387
SRR6320494	ripe fruit flesh	no	mature	24.2256
SRR5405143	ripe fruit peel	no	mature	20.3527
SRR6320572	ripe fruit peel	no	mature	12.7596
SRR7403504	fruit	uninfected	mature	14.9014
SRR7403506	fruit	uninfected	mature	14.8134
SRR7403507	fruit	uninfected	mature	14.1418
SRR7403500	fruit	infected with penicillium expansum	mature	12.7402
SRR7403501	fruit	infected with penicillium expansum	mature	13.6906
SRR7403508	fruit	infected with penicillium expansum	mature	12.0627
SRR7403502	fruit	infected with penicillium expansum	mature	12.3542
SRR7403503	fruit	infected with penicillium expansum	mature	11.0254
SRR7403505	fruit	infected with penicillium expansum	mature	12.4033
SRR1613973	Central seeds	no	20DAPF	32.1171
SRR1613974	Central seeds	no	20DAPF	31.6278
SRR1613975	Central seeds	no	20DAPF	28.7922
SRR1613976	Lateral seeds	no	20DAPF	29.9644
SRR1613977	Lateral seeds	no	20DAPF	28.017
SRR1613978	Lateral seeds	no	20DAPF	30.072
SRR3744786	stem	no	mature	20.6567
SRR3744787	stem	no	mature	21.7579
SRR3744772	stem	no	mature	20.521
SRX765691	seedling shoot apex	no	4-6 week old seedling	33.2754
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	31.8419
SRR1089478	leaf	Virus-free	plantlets	17.4598
SRR1089477	leaf	ASGV-infected	plantlets	18.6412
SRR767660	leaf	uninfected	fully developed	14.3278
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	9.71718
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	12.6679
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	8.99725
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.7329
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	12.646
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	12.6863
SRR6308182	young leaf	no	immature leaves	33.2539
SRR3744769	leaf	no	mature	19.7955
SRR3744770	leaf	no	mature	19.1917
SRR3744771	leaf	no	mature	20.662
SRR5405145	leaf	no	mature	12.3969
SRR6320561	leaf	no	mature	15.6846