Gene detail

Detail information of MD04G1242700 Annotation

Gene ID	Annotation
MD04G1242700	Leucine-rich repeat (LRR) family protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0088	extracellular region aspartic-type endopeptidase activity regulation of double fertilization forming a zygote and endosperm proteolysis

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD04G1242700	mRNA	Chr04	31941358	31942950	+

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Pyrus communis	PCP026126.1	1	-
Solanum lycopersicum	Solyc01g011050.2.1	1	Leucine-rich repeat (LRR) family protein
Nicotiana benthamiana	Niben101Scf01917g04004.1	1	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1045
Nicotiana benthamiana	Niben101Scf00574g05005.1	0.698	Leucine-rich repeat receptor-like protein kinase family protein LENGTH=1141

Gene Ontology

GO term	Description	Category
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.159238
SRR5252888	dormant buds	no	dormant buds(0 month)	0.321053
SRR5252889	dormant buds	no	dormant buds(0 month)	0.743846
SRR5252886	dormant buds	no	dormant buds(1 months)	1.08756
SRR5252887	dormant buds	no	dormant buds(1 months)	0.0722413
SRR5252884	dormant buds	no	dormant buds(2 months)	0.115369
SRR5252882	dormant buds	no	dormant buds(3 months)	0
SRR5252883	dormant buds	no	dormant buds(3 months)	0.126085
SRR5252880	dormant buds	no	dormant buds(4 months)	0
SRR5252881	dormant buds	no	dormant buds(4 months)	0.128176
SRR5252878	bud break	no	bud break	0
SRR5252879	bud break	no	bud break	0
SRR3744766	flower	no	mature	0.0968976
SRR3744767	flower	no	mature	0.0636052
SRR3744768	flower	no	mature	0.277144
SRR6308190	stigmas	no	open flowers	47.0123
SRR6308181	styles	no	open flowers	4.73741
SRR6308188	filaments	no	open flowers	1.42328
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.733981
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0.608103
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	10.3403
SRR6308189	ovaries	no	open flowers	2.03707
SRR3384922	fruit	no	1 week after full bloom	9.47851
SRR3384921	fruit	no	2 week after full bloom	10.2013
SRR3384920	fruit	no	3 week after full bloom	0.258115
SRR3384919	fruit	no	4 week after full bloom	0.572304
SRR3384923	fruit	no	5 week after full bloom	0
SRR3384918	fruit	no	6 week after full bloom	0.252446
SRR3384917	fruit	no	8 week after full bloom	0.0728933
SRR3384916	fruit	no	10 week after full bloom	0.0473472
SRR3384915	fruit	no	12 week after full bloom	0
SRR3384914	fruit	no	14 week after full bloom	0
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.0575999
SRR3384910	fruit	no	20 week after full bloom	0
SRR768128	whole fruit	no	25 days post anthesis	21.5106
SRR768129	whole fruit	no	35 days post anthesis	28.4893
SRR768130	whole fruit	no	60 days post anthesis	0.840088
SRR768131	whole fruit	no	87 days post anthesis	0.0903344
SRR7343308	immature fruit flesh	no	immature	0.319997
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	551.865
SRR1613974	Central seeds	no	20DAPF	490.481
SRR1613975	Central seeds	no	20DAPF	430.29
SRR1613976	Lateral seeds	no	20DAPF	555.86
SRR1613977	Lateral seeds	no	20DAPF	568.523
SRR1613978	Lateral seeds	no	20DAPF	594.911
SRR3744786	stem	no	mature	0
SRR3744787	stem	no	mature	0.0246588
SRR3744772	stem	no	mature	0
SRX765691	seedling shoot apex	no	4-6 week old seedling	0
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.0418025
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0.31674
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.152668
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.134619
SRR6308182	young leaf	no	immature leaves	0
SRR3744769	leaf	no	mature	0.0509387
SRR3744770	leaf	no	mature	0
SRR3744771	leaf	no	mature	0
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0