Gene detail

Detail information of MD05G1001600 Annotation

Gene ID	Annotation
MD05G1001600	dynamin-like 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0700	Golgi apparatus retrograde transport TATA element modulatory factor clathrin-coated endocytic vesicle

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1001600	mRNA	Chr05	811376	821703	+

Sequences

CDS:

MD05G1001600

GGAGAGAGAGAATGGCGAGAAGACTATGAGATTTCAAAACGCAAGAGAGAGAAAGTGGGAAGAAAGAAAGAGATAGAGAGAGAGAGTCGAGAGAGAGAGAGAGTTCTCCCACATTTCCCCTTTCCTTACGTTCGTTCGCTCGCAGTTCGCTCGATATCTCTTAATCCCTCAATTTCAGTTTCCTCCAAAGAAACGAGAGATAGAGCGAGCGAGAAACCCAGCCACACCAAACGAGATCGTTTTGGTTCCCGAATTCCCAATTCCTAGGGTTTGAATCAGATCCGTCGGTCTCCCTCTCAGATCTTTGATCCTCAACCCTCTGCTGCGATGGAGGCGATCGAGGAATTGTTGCAGCTATCAGACTCGATGCGGCAAGGCGCTGCTATCCTTGCCGACGAAGATGTTGACGAGAACACAACCTCCTCTCGCAGGGCTTCCAGTTTCCTTAACGTCGTCGCTCTCGGCAATGTTGGTGCGGGTAAATCAGCAGTTTTGAACAGTTTGATTGGACATCCTGTTTTGCCAACTGGTGAAAATGGTGCTACTCGAGCTCCCATTAGCATTGATTTGCAGAGGGATGGCTCCTTGAGCAGCAAATCTATTATATTGCAGATTGACAATAAATCTCAGCAAGTTTCTGCAAGTGCTTTACGGCATTCTCTGCAAGGTAGGCTGGGAAACGCCACAGGAAAAACCCGTGATGAAATTAATTTGAAACTACGAACAAGTACAGCCCCACCCCTCAAATTGATTGATTTACCTGGGCTTGATCAAAGGATCATGGATGAGTCTATGATTAGTGAATATGCTGAGCACAATGATTCAATTTTGCTCGTTATAGTTCCTGCATCCCAAGCACCTGAAGTTGCTTCATATCGAGCCCTTAGAGTCGTCAAGGAGTATGATGCAGATGGTACCAGAACTGTTGGTGTTATTAGCAAGATAGACCAAGCTGCTTCAGATCAGAAAGCACTTGCTGCAGTCCAGGCTCTTCTGTTAAATCAAGGACCATCAAGAGCATCTGATATCCCTTGGGTTGCTTTAATAGGTCAATCGGTTTCAATTGCTTCTGCACAGTCTGGAGGTTCTGAAAGTTCTCTAGAAACTGCCTGGAGGGCTGAAAGTGAAAGTCTGAAGTCTATTTTGACCGGAGCTCCTCAAAGTAAGCTAGGAAGAATAGCGTTGGTGGATGCTCTGGCACAGCAGATTCGTAGCCGTATGAAAGTTCGACTTCCAAACCTCCTTTCTGGGTTACAAGGGAAGTCTCAAATAGTTCAGGATGAGTTAGTAAAGCTTGGTGCATCTATGGTGCAGAGTGCTGAGGGTACCAGATCACTAGCTTTGGAGCTTTGCCGTGAGTTTGAGGATAAGTTTCTCCAACACATTACAACTGGTGAGGGTTCTGGATGGAAAATTGTTGGAAGTTTTGAAGGAAATTTCCCAAATAGAATAAAACAACTCCCATTAGACCGACATTTTGATATCAATAATGTGAAAAGGATTGTGTTGGAAGCAGATGGTTATCAACCTTATCTCATATCCCCTGAAAAGGGGTTGAGGTCTTTAATAAAAGGGGTCTTAGAGCTTGCAAAGGAGCCATCACGTCTCTGTGTGGATGAGGTACATCGTGTCCTGGTAGATATAGTTTCTGCTGCTGCAAATGCTACGTCAGGTCTTGGAAGATACCCTCCTTTCAAGAGGGAGGTTGTGGCCATTGCAAGTGCTGCATTGGATGCGTTTAAGAATGAAGCAAAGAAAATGGTGGTTGCACTGGTAGATATGGAGCGTGCTTTTGTGCCTCCCCAACACTTCATTCGCTTGGTGCAAAGGAGGATGGAGAGGCAGCGTAGAGAGGAAGAAGTGAAAAATCGATCTTCAAAGAAAGGACAAGAGGCAGAGCAATCAATAATGAATCGGGCAACGAGTCCTCAAACAGGGGGGGAGCAAGCTGGTGGAAGCATGAAATCAATGAAGGATAAGGATAAATCTGGTAAGGACGGCAAAGAAGTACAGGAGGCAACTGGTTTGAAGACCGCAGGTCCTGAAGGAGAAATAACAGCAGGTTTCTTGTATAAAAAAAGTGCCAAAACTAATGGATGGAGCAAGCGATGGTTTGTTTTGAATGAAAAGACTGGAAAGCTTGGTTACACCAAAAAGCAAGAGGAGAGACACTTCCGTGGTGTCATCACTTTGGAGGAGTGTAATATTGAAGAGGCTTCAGATGAGGATGAACCACCTCCATCAAAGAGCTCAAAGGACAAAAAGTCAAATGGACCAGAAAAATCACCGAGTCTTGTGTTTAAGATAACTAGCAAAGTTCCATATAAAACTGTTCTGAAAGCGCACAGTGCCGTTGTGCTAAAGGCAGAGACTGTGGCTGACAAGCTAGAGTGGATAAATAAGATTGGAAAGGTTATTCAACCTTCTAAAGGACTAATGAGGGGTGCTTCAACTGAAGGCGGTCCTACAATGCGACAAAGTCTTTCTGATGGTTCTCTTGATACAATGACTCGAAGACCGGCTGACCCTGAGGAAGAACTCCGGTGGATGTCTCAAGAAGTTCGTGGTTATGTTGAAGCTGTTTTGAATAGTTTGGCTGCTAATGTCCCTAAGGCAGTTGTTCTTTGCCAAGTTGAAAAGGCCAAGGAAGACATGTTAAATCAGCTATATAGCTCTGTCAGTGCTCAAAGCACAGCAAAGATTGAAGAGCTGCTTCAGGAGGATCAGAATGTGAAGCGGAGGAGGGAGCGCTACCAGAAACAGTCATCACTCCTTTCCAAACTAACACGCCAACTGAGCATTCATGACAACCGAGCAGCTGCTGCATCCAGCTGGTCCAATGGTGGTAGTGGTGCACCAGAAAGCAGCCCAAGATCTTCATCCAGTGGTGCATCAGGTGATGACTGGAGATCCGCCTTTGATGCCGCCGCTAATGGCCCAGTTGACCGTAGTTCTTCATTATCTAGATCTTCATCCAATGGTCACAGCCGACATTATAGTGATCCAGCACAAAATGGTGATGTGAACTCTGGTCCAAACTCTGGTAGCCGTCGTACTCCAAATCGGTTGCCACCTGCACCGCCAGGTTCTTCAGGCAGCAGATACTTTTAG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G10290.1	1	ADL6;DRP2A\|dynamin-like protein 6;DYNAMIN-RELATED PROTEIN 2A
Arabidopsis thaliana	AT1G59610.1	0.684	ADL3;CF1;DL3;DRP2B\|dynamin-like 3;;Dynamin related protein 2B
Prunus persica	Prupe.8G004400.1.p	1	dynamin-like 3
Pyrus x bretschneideri	Pbr001746.1	1	-
Pyrus x bretschneideri	Pbr008032.1	0.75	-
Rosa multiflora	Rmu_sc0001209.1_g000036.1	1	-
Rubus occidentalis	Ro02_G08759	1	-
Fragaria vesca	mrna31236.1	1	dynamin-like 3
Vitis vinifera	GSVIVT01037193001	1	dynamin-like 3
Solanum lycopersicum	Solyc11g039650.1.1	1	dynamin-like 3
Populus trichocarpa	Potri.019G068700.1	1	dynamin-like 3
Nicotiana benthamiana	Niben101Scf09472g02009.1	1	Dynamin-2B
Nicotiana benthamiana	Niben101Scf06437g06008.1	0.701	Dynamin-2B
Oryza sativa	LOC_Os08g32920.1	1	"dynamin-2B, putative, expressed"
Oryza sativa	LOC_Os02g50550.1	1	"dynamin, putative, expressed"
Oryza sativa	LOC_Os06g13820.1	1	"dynamin, putative, expressed"
Zea mays	GRMZM2G157462_P01	1	Dynamin-2A;

Gene Ontology

GO term	Description	Category
GO:0005543	phospholipid binding	molecular_function
GO:0005525	GTP binding	molecular_function
GO:0003924	GTPase activity	molecular_function
GO:0005515	protein binding	molecular_function

KEGG

KO	Description	Enzyme
K01528	dynamin GTPase	EC:3.6.5.5

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.19	Dynamin_N	42	205	1.10E-29
PF00169.25	PH	579	697	6.70E-11

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	16.6079
SRR5252888	dormant buds	no	dormant buds(0 month)	28.4991
SRR5252889	dormant buds	no	dormant buds(0 month)	26.4944
SRR5252886	dormant buds	no	dormant buds(1 months)	32.5466
SRR5252887	dormant buds	no	dormant buds(1 months)	33.5935
SRR5252884	dormant buds	no	dormant buds(2 months)	24.5456
SRR5252882	dormant buds	no	dormant buds(3 months)	28.1977
SRR5252883	dormant buds	no	dormant buds(3 months)	19.714
SRR5252880	dormant buds	no	dormant buds(4 months)	28.3064
SRR5252881	dormant buds	no	dormant buds(4 months)	29.3752
SRR5252878	bud break	no	bud break	38.6504
SRR5252879	bud break	no	bud break	37.092
SRR3744766	flower	no	mature	26.5324
SRR3744767	flower	no	mature	26.1737
SRR3744768	flower	no	mature	27.4109
SRR6308190	stigmas	no	open flowers	26.254
SRR6308181	styles	no	open flowers	25.6909
SRR6308188	filaments	no	open flowers	27.2115
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	39.2691
SRR6308192	pollen	no	open flowers	94.1263
SRR6308191	petals	no	open flowers	25.2969
SRR6308194	sepals	no	open flowers	24.7016
SRR6308193	receptacles	no	open flowers	20.5311
SRR6308189	ovaries	no	open flowers	23.8017
SRR3384922	fruit	no	1 week after full bloom	10.3623
SRR3384921	fruit	no	2 week after full bloom	10.1005
SRR3384920	fruit	no	3 week after full bloom	11.9155
SRR3384919	fruit	no	4 week after full bloom	12.4154
SRR3384923	fruit	no	5 week after full bloom	14.0302
SRR3384918	fruit	no	6 week after full bloom	17.4206
SRR3384917	fruit	no	8 week after full bloom	20.7798
SRR3384916	fruit	no	10 week after full bloom	21.384
SRR3384915	fruit	no	12 week after full bloom	16.1832
SRR3384914	fruit	no	14 week after full bloom	19.4965
SRR3384913	fruit	no	16 week after full bloom	21.0144
SRR3384912	fruit	no	18 week after full bloom	20.3783
SRR3384911	fruit	no	19 week after full bloom	16.8039
SRR3384910	fruit	no	20 week after full bloom	25.9491
SRR768128	whole fruit	no	25 days post anthesis	22.015
SRR768129	whole fruit	no	35 days post anthesis	18.0976
SRR768130	whole fruit	no	60 days post anthesis	22.7854
SRR768131	whole fruit	no	87 days post anthesis	50.0303
SRR7343308	immature fruit flesh	no	immature	25.2573
SRR7343309	immature fruit flesh	no	immature	24.5809
SRR6320494	ripe fruit flesh	no	mature	33.9526
SRR5405143	ripe fruit peel	no	mature	33.6175
SRR6320572	ripe fruit peel	no	mature	30.0117
SRR7403504	fruit	uninfected	mature	25.4021
SRR7403506	fruit	uninfected	mature	26.7276
SRR7403507	fruit	uninfected	mature	26.3405
SRR7403500	fruit	infected with penicillium expansum	mature	47.5354
SRR7403501	fruit	infected with penicillium expansum	mature	46.8994
SRR7403508	fruit	infected with penicillium expansum	mature	47.8405
SRR7403502	fruit	infected with penicillium expansum	mature	42.5649
SRR7403503	fruit	infected with penicillium expansum	mature	41.2096
SRR7403505	fruit	infected with penicillium expansum	mature	42.9495
SRR1613973	Central seeds	no	20DAPF	19.3043
SRR1613974	Central seeds	no	20DAPF	21.6497
SRR1613975	Central seeds	no	20DAPF	18.2796
SRR1613976	Lateral seeds	no	20DAPF	17.6368
SRR1613977	Lateral seeds	no	20DAPF	16.7247
SRR1613978	Lateral seeds	no	20DAPF	17.9936
SRR3744786	stem	no	mature	20.9375
SRR3744787	stem	no	mature	21.2936
SRR3744772	stem	no	mature	22.0249
SRX765691	seedling shoot apex	no	4-6 week old seedling	27.2867
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	25.8137
SRR1089478	leaf	Virus-free	plantlets	17.4085
SRR1089477	leaf	ASGV-infected	plantlets	16.5901
SRR767660	leaf	uninfected	fully developed	8.17775
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	3.52039
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	15.038
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	1.30398
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	16.4916
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	8.29822
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	14.8758
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	8.94492
SRR6308182	young leaf	no	immature leaves	21.1096
SRR3744769	leaf	no	mature	22.1823
SRR3744770	leaf	no	mature	21.7573
SRR3744771	leaf	no	mature	22.9423
SRR5405145	leaf	no	mature	30.7452
SRR6320561	leaf	no	mature	21.3811